Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P08_F_J06
(800 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_03_0510 - 21615724-21615909,21615992-21616075,21616164-216162... 44 1e-04
01_06_0458 + 29531069-29531126,29531247-29531302,29531407-295315... 36 0.050
10_08_0584 + 18971761-18971834,18971852-18973133,18973197-189745... 31 0.81
11_06_0693 - 26334574-26336121 30 1.9
02_05_1214 + 34976814-34979813 30 1.9
09_04_0159 + 15213752-15214028,15214158-15214399 30 2.5
05_04_0098 + 17982196-17982355,17982761-17982978,17983232-179834... 30 2.5
12_02_0893 + 24077634-24078379,24079347-24080412,24080741-240808... 29 3.3
03_02_0325 - 7467862-7468054,7468668-7468752,7469124-7469290,747... 29 3.3
05_02_0100 + 6594787-6594878,6595443-6595728,6595809-6595887,659... 29 4.3
03_06_0538 + 34591897-34593703,34595436-34595506,34596328-34598775 29 4.3
10_08_0685 - 19875801-19875980,19876074-19876277,19876392-198767... 28 7.5
07_03_0094 + 13335281-13335412,13337125-13337208,13337517-13338323 28 7.5
06_02_0176 + 12637287-12637376,12638108-12638280,12638631-126387... 28 7.5
01_06_0038 - 25819433-25820344 28 7.5
>06_03_0510 -
21615724-21615909,21615992-21616075,21616164-21616217,
21616324-21616371,21616529-21616611,21616963-21617113,
21617648-21617785,21617966-21618094,21618391-21618596,
21618734-21618845,21619145-21619204,21619331-21619429,
21619520-21619575,21620230-21620313,21621407-21621500
Length = 527
Score = 44.4 bits (100), Expect = 1e-04
Identities = 27/91 (29%), Positives = 46/91 (50%), Gaps = 1/91 (1%)
Frame = +3
Query: 402 GENTVRTIAMDGTEGLV-RGQPVLXSGSPIRIPVGAETLGRIINVIGEPIDERGPIPTDK 578
GE V + +GT G+ + V +G ++ PV + LGRI N G+PID PI +
Sbjct: 105 GEKAVVQV-FEGTSGIDNKYTTVQFTGEVLKTPVSLDMLGRIFNGSGKPIDNGPPILPEA 163
Query: 579 TAAIHAEAPEFVDMSVQQEILVTGIKVVDLL 671
I + + + +E++ TGI +D++
Sbjct: 164 YLDISGSSINPSERTYPEEMIQTGISTIDVM 194
>01_06_0458 +
29531069-29531126,29531247-29531302,29531407-29531505,
29531989-29532048,29532285-29532396,29532459-29532694,
29533092-29533220,29533325-29533462,29534043-29534193,
29534394-29534476,29534658-29534705,29534828-29534881,
29534971-29535054,29535152-29535337
Length = 497
Score = 35.5 bits (78), Expect = 0.050
Identities = 29/100 (29%), Positives = 49/100 (49%), Gaps = 10/100 (10%)
Frame = +3
Query: 402 GENTVRTIAMDGTEGLV-RGQPVLXSGSPIRIPVGAETLGRIINVIGEPIDERGPIPTDK 578
GE V + +GT G+ + V +G ++ PV + LGR+ N G+PID PI +
Sbjct: 65 GEKAVVQV-FEGTSGIDNKYTTVQFTGEVLKTPVSLDMLGRVFNGSGKPIDNGPPILPEA 123
Query: 579 TAAI------HAEAPEFVDMSVQ---QEILVTGIKVVDLL 671
I A A ++ S + +E++ TGI +D++
Sbjct: 124 YLDISDFDIGFAGAGSSINPSERTYPEEMIQTGISTIDVM 163
>10_08_0584 + 18971761-18971834,18971852-18973133,18973197-18974509,
18993885-18993935,18994674-18994829,18995048-18995123,
18995317-18995364,18995445-18995489,18995580-18995679,
18995923-18995968,18996115-18996176,18996257-18996355,
18996536-18996609,18996721-18996790,18997074-18997162,
18997327-18997404
Length = 1220
Score = 31.5 bits (68), Expect = 0.81
Identities = 15/47 (31%), Positives = 20/47 (42%)
Frame = -2
Query: 478 PXSSTGCPRTKPSVPSMAMVRTVFSPKCCATSKTKRGDRFCTSRAFR 338
P ++ G PR PS P + PKC + G FCT F+
Sbjct: 868 PGATAGRPRLSPSDPEVVGTEAE-CPKCAQLKLLREGAAFCTQDCFK 913
>11_06_0693 - 26334574-26336121
Length = 515
Score = 30.3 bits (65), Expect = 1.9
Identities = 15/29 (51%), Positives = 19/29 (65%)
Frame = -3
Query: 684 WHKERADRRLLYQLRESPAAQTCRQTLEL 598
WH A+RRLL+ L SP A+ R+ LEL
Sbjct: 20 WHPRTAERRLLHLLHHSPPAR--RRPLEL 46
>02_05_1214 + 34976814-34979813
Length = 999
Score = 30.3 bits (65), Expect = 1.9
Identities = 12/46 (26%), Positives = 18/46 (39%)
Frame = +2
Query: 623 CAAGDSRNWYKSRRSARSLCQRWKDWVVWRSWCGQNCIDYGTDQQC 760
C A + W ++R S+C RW + W + I G C
Sbjct: 614 CVAKYGQKWIRTRTVVDSVCPRWNEQYTWEVFDPCTVITVGVFDNC 659
>09_04_0159 + 15213752-15214028,15214158-15214399
Length = 172
Score = 29.9 bits (64), Expect = 2.5
Identities = 19/64 (29%), Positives = 26/64 (40%), Gaps = 3/64 (4%)
Frame = +2
Query: 602 SRVCRHVCAAGDSRNW-YKSRRSARSLCQRWKDWVVWRSWCGQN--CIDYGTDQQCCQSP 772
+ R CA D W ++ AR+ +R D + WR C D G+ CC P
Sbjct: 107 AEAARRPCA-DDGGGWTWRRSGPARARARRHGDLLRWRRTLAAQRPCADDGSVGTCCGGP 165
Query: 773 WWLL 784
W L
Sbjct: 166 AWAL 169
>05_04_0098 +
17982196-17982355,17982761-17982978,17983232-17983418,
17983957-17984057,17984708-17984885,17984956-17985233
Length = 373
Score = 29.9 bits (64), Expect = 2.5
Identities = 11/22 (50%), Positives = 15/22 (68%)
Frame = -2
Query: 445 PSVPSMAMVRTVFSPKCCATSK 380
P+ PS A VR SP+CC+ S+
Sbjct: 3 PTAPSPASVRAAASPRCCSRSR 24
>12_02_0893 +
24077634-24078379,24079347-24080412,24080741-24080866,
24081278-24081384,24081720-24081744
Length = 689
Score = 29.5 bits (63), Expect = 3.3
Identities = 12/42 (28%), Positives = 23/42 (54%)
Frame = -2
Query: 544 GSPITLMMRPRVSAPTGIRMGEPXSSTGCPRTKPSVPSMAMV 419
GSP+ R + AP G+ G+P + ++PS+P +++
Sbjct: 452 GSPVYAQSRSPIRAPLGVSFGDPKAQ----NSRPSIPHPSLI 489
>03_02_0325 -
7467862-7468054,7468668-7468752,7469124-7469290,
7470130-7471133
Length = 482
Score = 29.5 bits (63), Expect = 3.3
Identities = 19/59 (32%), Positives = 31/59 (52%)
Frame = -1
Query: 536 DYIDDASEGFSSHRDTNG*ARXEYGLPTD*AFSTVHGNGTYSVLSQVLRHLQDQAGRSI 360
D+ DD +EG + +D +G A YGL TV G +VL+Q+ + L++ S+
Sbjct: 171 DHEDDDAEGAEAEKDADGEAALSYGL-------TVASKGQEAVLAQLDKVLEEYTTFSV 222
>05_02_0100 +
6594787-6594878,6595443-6595728,6595809-6595887,
6595964-6596013,6597281-6597478,6597555-6597612,
6598388-6598496,6599253-6599321,6599684-6599812,
6599970-6600082,6600386-6600479,6602827-6602917,
6604145-6604233,6604715-6604856,6605849-6606196,
6606314-6607408
Length = 1013
Score = 29.1 bits (62), Expect = 4.3
Identities = 18/49 (36%), Positives = 24/49 (48%), Gaps = 1/49 (2%)
Frame = +3
Query: 423 IAMDGTEGLVRGQPVLXSGSPIRIPVGAE-TLGRIINVIGEPIDERGPI 566
I D E + P S S +P AE L I NV+GE +D+ GP+
Sbjct: 128 IVPDSEEESLPSSPETSSTSNYDMPDLAEQNLEHIYNVLGEMVDKEGPV 176
>03_06_0538 + 34591897-34593703,34595436-34595506,34596328-34598775
Length = 1441
Score = 29.1 bits (62), Expect = 4.3
Identities = 19/70 (27%), Positives = 33/70 (47%), Gaps = 2/70 (2%)
Frame = -2
Query: 664 STTFIPVTRISCC--TDMSTNSGASAWIAAVLSVGMGPRSSIGSPITLMMRPRVSAPTGI 491
S+ F+P+ +S TD++T SGA +W VL + IG + + RV +
Sbjct: 152 SSLFLPLYFVSSGLKTDVTTISGAKSWGLLVLVMTTACAGKIGGTVAASLLMRVPLREAL 211
Query: 490 RMGEPXSSTG 461
+G ++ G
Sbjct: 212 ALGMLMNTKG 221
>10_08_0685 -
19875801-19875980,19876074-19876277,19876392-19876724,
19876834-19877115,19877210-19877425,19879752-19880024
Length = 495
Score = 28.3 bits (60), Expect = 7.5
Identities = 17/46 (36%), Positives = 28/46 (60%), Gaps = 2/46 (4%)
Frame = -1
Query: 644 YENLLLHRHVDKLWS--FGMDSSSLVGWDGTALVNRFADYIDDASE 513
++ L+L +D +++ FG D ++L DG+ +RFA DDASE
Sbjct: 162 FQGLMLRATMDSIFTIAFGTDLNTL---DGSGEGSRFAAAFDDASE 204
>07_03_0094 + 13335281-13335412,13337125-13337208,13337517-13338323
Length = 340
Score = 28.3 bits (60), Expect = 7.5
Identities = 8/16 (50%), Positives = 12/16 (75%)
Frame = +2
Query: 719 CGQNCIDYGTDQQCCQ 766
C C+ +GTD+QCC+
Sbjct: 268 CKSACLAFGTDEQCCR 283
>06_02_0176 +
12637287-12637376,12638108-12638280,12638631-12638743,
12639125-12639313,12639397-12639464,12639601-12639684,
12639791-12639844,12640445-12640525,12640615-12640708,
12640830-12640903,12640976-12641086,12641299-12641355,
12641458-12641562,12641656-12641772,12641900-12642003,
12642229-12642394,12642513-12642641
Length = 602
Score = 28.3 bits (60), Expect = 7.5
Identities = 14/43 (32%), Positives = 21/43 (48%)
Frame = +2
Query: 566 PNRQDCCYPCRSSRVCRHVCAAGDSRNWYKSRRSARSLCQRWK 694
P++ DC Y VC H+ AAG + + + RS +WK
Sbjct: 422 PSKFDCDYAYVLGHVCYHILAAG-LNGYMATVTNLRSPVNKWK 463
>01_06_0038 - 25819433-25820344
Length = 303
Score = 28.3 bits (60), Expect = 7.5
Identities = 14/67 (20%), Positives = 27/67 (40%)
Frame = +2
Query: 584 CYPCRSSRVCRHVCAAGDSRNWYKSRRSARSLCQRWKDWVVWRSWCGQNCIDYGTDQQCC 763
C + C AA + S S+ + ++ + VWR++C Y ++C
Sbjct: 167 CERAKGGGACAFPTAAAAPSSSSSSSSSSSAGGRKLVEETVWRAYCNGRSCGYAVRRECG 226
Query: 764 QSPWWLL 784
+ W +L
Sbjct: 227 AADWRVL 233
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,294,041
Number of Sequences: 37544
Number of extensions: 511068
Number of successful extensions: 1513
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1453
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1513
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2174172540
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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