Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P08_F_J05
(861 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_03_0151 + 8955617-8955733,8956771-8956885,8957247-8957269,895... 34 0.17
07_03_0539 - 19237573-19239169,19239258-19239410,19239505-192395... 31 1.6
06_01_0785 - 5873244-5873357,5873458-5873562,5874333-5874424,587... 31 1.6
05_07_0194 + 28327328-28327376,28327699-28327742,28327852-283279... 30 2.7
08_01_0071 - 507595-507762,508027-508155,508567-508752,509306-50... 29 3.6
02_05_1273 + 35381626-35382486,35382567-35382691,35384851-353854... 29 3.6
01_06_0109 - 26526691-26526775,26526894-26527019,26527228-265273... 29 3.6
01_06_0473 - 29598704-29599642 29 6.3
01_01_1031 + 8169505-8169553,8169831-8169905,8170395-8170438,817... 29 6.3
09_06_0030 - 20341141-20341235,20341336-20341469,20341563-20341684 28 8.3
07_01_0570 + 4228567-4228852,4229198-4229217 28 8.3
>05_03_0151 +
8955617-8955733,8956771-8956885,8957247-8957269,
8958161-8958164,8958269-8958366
Length = 118
Score = 33.9 bits (74), Expect = 0.17
Identities = 22/66 (33%), Positives = 34/66 (51%)
Frame = -2
Query: 689 KLIKIKAMNTATLVVNIVSMTRSTLVITTGTVPLVTENVSASLFTSSTKFVLPIKFPLMR 510
K I +K +T L+ +++ RS L I T + VTE S SL+ + VL L
Sbjct: 38 KKIGVKTQDTYALLT-MINHCRSILYIETQLLKYVTEKESDSLYVGIIQVVLRQPAMLQH 96
Query: 509 ILPFHV 492
ILP+++
Sbjct: 97 ILPYNI 102
>07_03_0539 -
19237573-19239169,19239258-19239410,19239505-19239566,
19239855-19240103,19240248-19240337,19240453-19240632,
19240713-19240942,19241558-19241735,19242327-19242432,
19242786-19242883,19243683-19243813,19243908-19244087,
19244179-19244443,19244557-19244627,19244707-19244922,
19245147-19245294
Length = 1317
Score = 30.7 bits (66), Expect = 1.6
Identities = 24/82 (29%), Positives = 36/82 (43%), Gaps = 2/82 (2%)
Frame = -1
Query: 834 HRGRV-REYHVAQT-EGXEWHKKELSDHSYGGSDRSXDDVTHRRPVHRTSKIDKD*SYEH 661
HRG V R Y A + E + + ++D G S D ++R+ H++ S
Sbjct: 101 HRGSVSRRYRGANSDERTSFKEPTITDEDGRGPSPSHRDGSYRQDTHKSRSSQGSHS--- 157
Query: 660 RNAGGEYRVYDPFDSRDHHGHR 595
R+ Y Y+ SRD HG R
Sbjct: 158 RSTPRRYDDYEDRGSRDKHGER 179
>06_01_0785 -
5873244-5873357,5873458-5873562,5874333-5874424,
5874525-5874594,5875080-5875202,5875287-5875372,
5875547-5875648,5875874-5876096,5876217-5876282,
5876407-5876497,5876574-5876701,5877734-5877749,
5878171-5878318,5878440-5878511,5878586-5878690,
5879122-5879291,5880093-5880424
Length = 680
Score = 30.7 bits (66), Expect = 1.6
Identities = 13/47 (27%), Positives = 21/47 (44%)
Frame = +1
Query: 418 KISSQNEQLAWAEWNSSNLYQKHDSTWKGKIRINGNFIGRTNLVLEV 558
+I N+++AW EW+ N+ W G +G+ R EV
Sbjct: 242 RIDHNNKRMAWIEWSHPNMPWDKSELWVGYFSESGDLTKRVEHTNEV 288
>05_07_0194 +
28327328-28327376,28327699-28327742,28327852-28327961,
28328250-28328287,28328371-28328448,28328527-28328580,
28328663-28328764,28329152-28329237,28329327-28329430,
28329542-28329610,28329689-28329804,28329949-28329983,
28330152-28330294,28330473-28330598,28330700-28330784
Length = 412
Score = 29.9 bits (64), Expect = 2.7
Identities = 14/39 (35%), Positives = 23/39 (58%), Gaps = 3/39 (7%)
Frame = +1
Query: 289 VICQNVPRLTAVFSPPSIIVKM---DEYKYVDVSIEGSG 396
+IC+N+PRL ++ P I + D+Y+ D I+G G
Sbjct: 114 IICKNIPRLVPGWTKPICIGRHAFGDQYRATDAVIKGPG 152
>08_01_0071 -
507595-507762,508027-508155,508567-508752,509306-509381,
509477-509559,509778-509885,510420-510497,511762-511827
Length = 297
Score = 29.5 bits (63), Expect = 3.6
Identities = 17/42 (40%), Positives = 25/42 (59%)
Frame = +1
Query: 412 AFKISSQNEQLAWAEWNSSNLYQKHDSTWKGKIRINGNFIGR 537
AFK ++ EQL +A+ N +Q+ +T KGK + G F GR
Sbjct: 209 AFKSKARFEQLEFAQNKRQNAWQQFQTT-KGKAKKVGFFSGR 249
>02_05_1273 +
35381626-35382486,35382567-35382691,35384851-35385450,
35385550-35385841,35386199-35386364,35386664-35386707,
35386866-35386979,35387171-35387290,35387541-35387626,
35388340-35388502
Length = 856
Score = 29.5 bits (63), Expect = 3.6
Identities = 19/55 (34%), Positives = 22/55 (40%)
Frame = -1
Query: 858 AREEHPETHRGRVREYHVAQTEGXEWHKKELSDHSYGGSDRSXDDVTHRRPVHRT 694
A E H ET RE+ Q E EWH E S + D D P+ RT
Sbjct: 453 AEELHSETMEDDAREHDHLQDEHDEWHDDE-SHGTENWQDDFQDSPLDMGPIPRT 506
>01_06_0109 -
26526691-26526775,26526894-26527019,26527228-26527370,
26527521-26527555,26527676-26527791,26527868-26527936,
26528070-26528173,26528253-26528338,26528429-26528530,
26528609-26528662,26528763-26528840,26528936-26528973,
26529235-26529344,26529463-26529506,26530232-26530280
Length = 412
Score = 29.5 bits (63), Expect = 3.6
Identities = 14/39 (35%), Positives = 23/39 (58%), Gaps = 3/39 (7%)
Frame = +1
Query: 289 VICQNVPRLTAVFSPPSIIVKM---DEYKYVDVSIEGSG 396
+IC+NVPRL ++ P I + D+Y+ D ++G G
Sbjct: 114 IICKNVPRLVPGWTKPICIGRHAFGDQYRATDAVLKGPG 152
>01_06_0473 - 29598704-29599642
Length = 312
Score = 28.7 bits (61), Expect = 6.3
Identities = 10/19 (52%), Positives = 12/19 (63%)
Frame = +1
Query: 691 GCAMHWPTVRDVIXRPIGP 747
GCA W TV ++ RP GP
Sbjct: 147 GCAPEWRTVASLLPRPFGP 165
>01_01_1031 +
8169505-8169553,8169831-8169905,8170395-8170438,
8170633-8170742,8170960-8170997,8171055-8171186,
8171298-8171351,8171424-8171525,8172679-8172764,
8172870-8172973,8173056-8173124,8173156-8173209,
8173210-8173325,8173420-8173454,8173637-8173779,
8174105-8174227,8174305-8174398
Length = 475
Score = 28.7 bits (61), Expect = 6.3
Identities = 14/39 (35%), Positives = 22/39 (56%), Gaps = 3/39 (7%)
Frame = +1
Query: 289 VICQNVPRLTAVFSPPSIIVKM---DEYKYVDVSIEGSG 396
+IC+N+PRL + P I + D+Y+ D I+G G
Sbjct: 157 IICKNIPRLVPGWIKPICIGRHAFGDQYRATDTVIKGPG 195
>09_06_0030 - 20341141-20341235,20341336-20341469,20341563-20341684
Length = 116
Score = 28.3 bits (60), Expect = 8.3
Identities = 20/58 (34%), Positives = 26/58 (44%), Gaps = 7/58 (12%)
Frame = +1
Query: 346 VKMDEYKY---VDVSIEGSGLEL----NDAFKISSQNEQLAWAEWNSSNLYQKHDSTW 498
V MD Y VDV+ G LEL ND F S+ + EW + +Y+ D W
Sbjct: 50 VSMDGTPYLRKVDVAAYGDYLELVEALNDMFYCSTIGLMDGYGEWEHAVVYEDGDGDW 107
>07_01_0570 + 4228567-4228852,4229198-4229217
Length = 101
Score = 28.3 bits (60), Expect = 8.3
Identities = 12/23 (52%), Positives = 12/23 (52%)
Frame = +3
Query: 582 RHQRYGARGDHESRTGHRHDIHH 650
RH R G RGDH G H I H
Sbjct: 24 RHYRDGWRGDHHGGHGQEHIISH 46
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,211,000
Number of Sequences: 37544
Number of extensions: 543453
Number of successful extensions: 1285
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1241
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1285
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2409218220
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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