Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P08_F_J05
         (861 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY753542-1|AAV28545.1| 3361|Anopheles gambiae SGS5 protein.            25   0.23 
AB090820-2|BAC57916.1| 1222|Anopheles gambiae reverse transcript...    24   6.8  

>AY753542-1|AAV28545.1| 3361|Anopheles gambiae SGS5 protein.
          Length = 3361

 Score = 25.0 bits (52), Expect(2) = 0.23
 Identities = 8/18 (44%), Positives = 11/18 (61%)
 Frame = +1

Query: 277 CPLWVICQNVPRLTAVFS 330
           CPLW +C +  R T  F+
Sbjct: 555 CPLWPLCGSASRQTQTFT 572



 Score = 21.8 bits (44), Expect(2) = 0.23
 Identities = 6/8 (75%), Positives = 7/8 (87%)
 Frame = +1

Query: 223 KMCPIWPL 246
           K CP+WPL
Sbjct: 553 KACPLWPL 560


>AB090820-2|BAC57916.1| 1222|Anopheles gambiae reverse transcriptase
           protein.
          Length = 1222

 Score = 23.8 bits (49), Expect = 6.8
 Identities = 13/45 (28%), Positives = 23/45 (51%)
 Frame = +3

Query: 204 ININDIENVSDLAITPDRLVRTGVVSVVGDMPECAQTNGGLLASK 338
           IN+N   +  DLA+   R+ R  V  +V ++    + NG  +A +
Sbjct: 6   INVNRSRSAQDLALNTMRVERADVCLMV-ELHSVPRNNGNWVADR 49


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 946,581
Number of Sequences: 2352
Number of extensions: 21061
Number of successful extensions: 44
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 42
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 44
length of database: 563,979
effective HSP length: 64
effective length of database: 413,451
effective search space used: 91786122
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)