Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P08_F_J05
(861 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AC024856-1|ABB51172.1| 334|Caenorhabditis elegans Hypothetical ... 56 6e-11
AF026210-5|AAB71287.1| 632|Caenorhabditis elegans Hypothetical ... 29 3.2
AF026210-4|AAT81192.1| 627|Caenorhabditis elegans Hypothetical ... 29 3.2
Z81479-7|CAB03943.1| 435|Caenorhabditis elegans Hypothetical pr... 29 5.6
Z81523-4|CAB04243.1| 824|Caenorhabditis elegans Hypothetical pr... 28 7.4
U13642-8|AAG00040.1| 428|Caenorhabditis elegans Similar to tran... 28 7.4
U13642-7|AAZ32791.1| 446|Caenorhabditis elegans Similar to tran... 28 7.4
AY340594-1|AAQ17186.1| 824|Caenorhabditis elegans SPD-2 protein. 28 7.4
AC006834-10|AAF40005.1| 745|Caenorhabditis elegans Hypothetical... 28 7.4
>AC024856-1|ABB51172.1| 334|Caenorhabditis elegans Hypothetical
protein Y71G10AR.4 protein.
Length = 334
Score = 56.4 bits (130), Expect(2) = 6e-11
Identities = 30/87 (34%), Positives = 46/87 (52%), Gaps = 2/87 (2%)
Frame = +1
Query: 604 VVITRVERVIDTIFTTSVAVFIALIFINFGCAMHWPTVRDVIXRPIGPAIGMVGQFLFMP 783
VV ++ R + F SV V I++ + GC + V + +P+ P IG+ QF+ MP
Sbjct: 171 VVRSKESRRLTVYFVISVVVLISMANVMMGCELDIDAVLATLKKPVAPGIGLFAQFIIMP 230
Query: 784 LXSFGLGYVIF-PNS-PAMRLGMFFXG 858
L S+ + Y IF P +M LG+F G
Sbjct: 231 LLSYLIAYAIFMPRGLYSMALGLFVTG 257
Score = 28.7 bits (61), Expect(2) = 6e-11
Identities = 32/131 (24%), Positives = 65/131 (49%), Gaps = 15/131 (11%)
Frame = +1
Query: 241 PLHLIVLYVLALCPLWVICQNVPRLTAVFSPPSIIVKMDEYKYVDVSI---------EGS 393
P+ LI+ +L L V + +T +SP SI ++EY DV++ E
Sbjct: 10 PMVLIIRLLLQLSST-VSAELSRSMTLTYSPQSIH-DLEEYGSTDVNVTLKFPKNEFETE 67
Query: 394 GLELNDAFKISSQNEQLAWAEWNSSNL----YQKHDSTWKGK--IRINGNFIGRTNLVLE 555
+E + A ++S + + A A++N+ L ++ + ++ + I INGN +G+T + +
Sbjct: 68 NIE-HYALSVNSFHPETATADYNTEKLKTEQFRLNGQFYETETIITINGNLLGKTAMKMR 126
Query: 556 VKRDADTFSVT 588
+ A+ ++ T
Sbjct: 127 LVPAAEYYNET 137
>AF026210-5|AAB71287.1| 632|Caenorhabditis elegans Hypothetical
protein F48A11.5a protein.
Length = 632
Score = 29.5 bits (63), Expect = 3.2
Identities = 11/19 (57%), Positives = 15/19 (78%)
Frame = +3
Query: 297 PECAQTNGGLLASKYNRQN 353
PE A+ NGG+LAS++N N
Sbjct: 188 PESARQNGGILASRHNNHN 206
>AF026210-4|AAT81192.1| 627|Caenorhabditis elegans Hypothetical
protein F48A11.5b protein.
Length = 627
Score = 29.5 bits (63), Expect = 3.2
Identities = 11/19 (57%), Positives = 15/19 (78%)
Frame = +3
Query: 297 PECAQTNGGLLASKYNRQN 353
PE A+ NGG+LAS++N N
Sbjct: 183 PESARQNGGILASRHNNHN 201
>Z81479-7|CAB03943.1| 435|Caenorhabditis elegans Hypothetical
protein C34F6.8 protein.
Length = 435
Score = 28.7 bits (61), Expect = 5.6
Identities = 16/43 (37%), Positives = 26/43 (60%), Gaps = 4/43 (9%)
Frame = +1
Query: 289 VICQNVPRLTAVFSPPSIIVKM---DEYKYVDVSI-EGSGLEL 405
++C+N+PRL ++ P I + D+YK D+ I GS L+L
Sbjct: 135 ILCKNIPRLVPGWTQPITIGRHAFGDQYKCTDLVIPSGSTLQL 177
>Z81523-4|CAB04243.1| 824|Caenorhabditis elegans Hypothetical
protein F32H2.3 protein.
Length = 824
Score = 28.3 bits (60), Expect = 7.4
Identities = 16/39 (41%), Positives = 22/39 (56%), Gaps = 2/39 (5%)
Frame = +1
Query: 319 AVFSPPSIIVKMDEYKYVDVSIEGSGLELNDA--FKISS 429
A F P IVK K VD+ I+ S ++L+D F+ SS
Sbjct: 639 AFFPAPGFIVKKKSDKRVDIRIDSSYIDLHDENNFRTSS 677
>U13642-8|AAG00040.1| 428|Caenorhabditis elegans Similar to
transporter of divalentcations protein 1, isoform a
protein.
Length = 428
Score = 28.3 bits (60), Expect = 7.4
Identities = 18/74 (24%), Positives = 26/74 (35%), Gaps = 3/74 (4%)
Frame = -1
Query: 810 HVAQTEGXEWHKK---ELSDHSYGGSDRSXDDVTHRRPVHRTSKIDKD*SYEHRNAGGEY 640
H+ ++EG H DH+ G DD H H + D + H +
Sbjct: 347 HIHKSEGNHSHDNGHGHSHDHNDHGHSHGHDDHGHDSHGHSHDHNEHDHGHSHGGNNDNH 406
Query: 639 RVYDPFDSRDHHGH 598
S +HHGH
Sbjct: 407 GHSHSAGSDNHHGH 420
>U13642-7|AAZ32791.1| 446|Caenorhabditis elegans Similar to
transporter of divalentcations protein 1, isoform b
protein.
Length = 446
Score = 28.3 bits (60), Expect = 7.4
Identities = 18/74 (24%), Positives = 26/74 (35%), Gaps = 3/74 (4%)
Frame = -1
Query: 810 HVAQTEGXEWHKK---ELSDHSYGGSDRSXDDVTHRRPVHRTSKIDKD*SYEHRNAGGEY 640
H+ ++EG H DH+ G DD H H + D + H +
Sbjct: 365 HIHKSEGNHSHDNGHGHSHDHNDHGHSHGHDDHGHDSHGHSHDHNEHDHGHSHGGNNDNH 424
Query: 639 RVYDPFDSRDHHGH 598
S +HHGH
Sbjct: 425 GHSHSAGSDNHHGH 438
>AY340594-1|AAQ17186.1| 824|Caenorhabditis elegans SPD-2 protein.
Length = 824
Score = 28.3 bits (60), Expect = 7.4
Identities = 16/39 (41%), Positives = 22/39 (56%), Gaps = 2/39 (5%)
Frame = +1
Query: 319 AVFSPPSIIVKMDEYKYVDVSIEGSGLELNDA--FKISS 429
A F P IVK K VD+ I+ S ++L+D F+ SS
Sbjct: 639 AFFPAPGFIVKKKSDKRVDIRIDSSYIDLHDENNFRTSS 677
>AC006834-10|AAF40005.1| 745|Caenorhabditis elegans Hypothetical
protein ZK973.1 protein.
Length = 745
Score = 28.3 bits (60), Expect = 7.4
Identities = 12/54 (22%), Positives = 24/54 (44%)
Frame = +1
Query: 316 TAVFSPPSIIVKMDEYKYVDVSIEGSGLELNDAFKISSQNEQLAWAEWNSSNLY 477
TA P +V M + +G G++L + ++ + + +A N +N Y
Sbjct: 352 TAFLKPTGEVVDMSSFSIYGTRFDGGGVDLLKKWSQQTERKDIVFAIGNGTNTY 405
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,620,268
Number of Sequences: 27780
Number of extensions: 468845
Number of successful extensions: 1338
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1273
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1338
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2150453690
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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