Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P08_F_J03
         (864 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC2F3.08 |sut1||alpha-glucoside transporter |Schizosaccharomyc...    38   0.001
SPCC14G10.02 ||SPCC18B5.13|ribosome biogenesis protein Urb1|Schi...    28   1.5  
SPAC1F7.03 |pkd2||TRP-like ion channel |Schizosaccharomyces pomb...    26   6.0  
SPAC20G8.03 |itr2||MFS myo-inositol transporter|Schizosaccharomy...    26   6.0  
SPBC337.04 |ppk27||serine/threonine protein kinase Ppk27 |Schizo...    26   6.0  
SPBC11B10.03 |cog8||Golgi transport complex subunit Cog8 |Schizo...    26   7.9  

>SPAC2F3.08 |sut1||alpha-glucoside transporter |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 553

 Score = 38.3 bits (85), Expect = 0.001
 Identities = 22/66 (33%), Positives = 38/66 (57%), Gaps = 4/66 (6%)
 Frame = +1

Query: 490 YLTIHMRELGINVEETAIMSAVTPVVSIIMPPLAGMLAD----KIGNFRLLLALSSVLGG 657
           Y T ++  LG+  E T+I+    P+  I++ P+AG+L+D    +IG  R  +  +S+LG 
Sbjct: 56  YGTPYLFSLGLRKEWTSIIWIAGPLTGILIQPIAGILSDRVNSRIGRRRPFMLCASLLGT 115

Query: 658 ISALLL 675
            S  L+
Sbjct: 116 FSLFLM 121


>SPCC14G10.02 ||SPCC18B5.13|ribosome biogenesis protein
            Urb1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1568

 Score = 28.3 bits (60), Expect = 1.5
 Identities = 16/57 (28%), Positives = 29/57 (50%), Gaps = 1/57 (1%)
 Frame = +3

Query: 354  IHTNREDATNQVIFQKNNR*LEAEKIDSIKNTVLRSCFNFVR-VVSLLDDTYARAWH 521
            +H+N++ +  QVI Q+N   +    +   K     +C NF+R  + +LD+   R  H
Sbjct: 1343 LHSNQQVSNIQVIVQQNFLGMIVMGLSLFKEEARFACLNFLRNFIPILDEQKFREKH 1399


>SPAC1F7.03 |pkd2||TRP-like ion channel |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 710

 Score = 26.2 bits (55), Expect = 6.0
 Identities = 21/82 (25%), Positives = 34/82 (41%)
 Frame = +1

Query: 334 ILFCYLEFIPTVKMRLIRSFFKRITDDXXXXXXXXXXXXFFVHASTLYVLYPYLTIHMRE 513
           + F Y  F P + + L+RS F                    V  + + +L PY T HM  
Sbjct: 464 VRFFYFTF-PLLLITLVRSMFIGFGQGSPKVQGCAMFGISVVVFALMVILRPYATKHMNT 522

Query: 514 LGINVEETAIMSAVTPVVSIIM 579
           L I V   A+M+ ++    ++M
Sbjct: 523 LHIGV---ALMNLISGSFILVM 541


>SPAC20G8.03 |itr2||MFS myo-inositol transporter|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 557

 Score = 26.2 bits (55), Expect = 6.0
 Identities = 17/62 (27%), Positives = 33/62 (53%), Gaps = 5/62 (8%)
 Frame = +1

Query: 541 IMSAVTPVVSIIMPPLAGMLADKIGNFRLLLALSS--VLGGI---SALLLLAVPVGRITI 705
           ++++ T   ++I    +G LAD +G  RLLL   +  V+G +   ++  +  + VGR  +
Sbjct: 124 LITSATSFAALISATTSGWLADWVGRKRLLLCADAIFVIGSVIMAASRNVAMMVVGRFIV 183

Query: 706 TY 711
            Y
Sbjct: 184 GY 185


>SPBC337.04 |ppk27||serine/threonine protein kinase Ppk27
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 413

 Score = 26.2 bits (55), Expect = 6.0
 Identities = 16/63 (25%), Positives = 34/63 (53%)
 Frame = -3

Query: 499 SSSKDTTRTKLKHERRTVFLMESIFSASSHLLFF*KMT*LVASSRLV*IPNNKRGSNLYS 320
           S S++  + ++K  R+ ++ ++++    SH      +   V+S+ L+ + N   G +LY 
Sbjct: 139 SKSQNEKKARVKVFRQEIWALKTL----SHPCVVQLLNYYVSSAELILVENYCMGGDLYH 194

Query: 319 YTK 311
           YTK
Sbjct: 195 YTK 197


>SPBC11B10.03 |cog8||Golgi transport complex subunit Cog8
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 400

 Score = 25.8 bits (54), Expect = 7.9
 Identities = 12/29 (41%), Positives = 18/29 (62%)
 Frame = +2

Query: 188 NSFVIKIQFQIYGKTYKSLPCIKDKYSRF 274
           +SFV K+Q +I     K +P +KD  S+F
Sbjct: 327 SSFVRKLQLEICYVLQKFMPNVKDSTSKF 355


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,706,753
Number of Sequences: 5004
Number of extensions: 79795
Number of successful extensions: 235
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 223
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 235
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 430470850
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)