Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P08_F_J03
         (864 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_01_0475 + 3656628-3656791,3656944-3657013,3657114-3657310,365...    39   0.006
02_02_0062 - 6476019-6476419,6476624-6476960,6476985-6479657           30   2.1  
02_02_0054 - 6398829-6399047,6399470-6399676,6399858-6400557,640...    30   2.7  
10_07_0132 + 13263577-13263732,13265391-13265456,13265607-132657...    29   4.8  
06_01_0327 + 2377121-2377812,2377911-2378265                           29   4.8  
06_01_0326 + 2372176-2373057,2373146-2373610                           29   4.8  
06_01_0322 - 2335577-2335931,2336030-2336991                           29   4.8  
03_05_0001 - 19386264-19386284,19386446-19386517,19386614-193873...    29   6.3  

>03_01_0475 +
           3656628-3656791,3656944-3657013,3657114-3657310,
           3657409-3657484,3657794-3657877,3658247-3658326,
           3658422-3658548,3658727-3658786,3658874-3658924,
           3659013-3659171,3659296-3659428,3659545-3659717
          Length = 457

 Score = 38.7 bits (86), Expect = 0.006
 Identities = 20/60 (33%), Positives = 34/60 (56%)
 Frame = +1

Query: 484 YPYLTIHMRELGINVEETAIMSAVTPVVSIIMPPLAGMLADKIGNFRLLLALSSVLGGIS 663
           + YL + ++E+G+   + AI+     V   +M  LAG + D+ G+F+L     S+L GIS
Sbjct: 40  FTYLLLFLQEIGLAPRDAAIVMLSGQVADGLMTILAGEMIDRFGHFKLWHIGGSILVGIS 99


>02_02_0062 - 6476019-6476419,6476624-6476960,6476985-6479657
          Length = 1136

 Score = 30.3 bits (65), Expect = 2.1
 Identities = 14/44 (31%), Positives = 29/44 (65%)
 Frame = +1

Query: 586 LAGMLADKIGNFRLLLALSSVLGGISALLLLAVPVGRITITYPT 717
           LAG++   +G+ +L  ++ + LG +SAL  L++P  ++T + P+
Sbjct: 221 LAGLVGLGLGSNQLAGSIPASLGNLSALKYLSIPSAKLTGSIPS 264


>02_02_0054 -
           6398829-6399047,6399470-6399676,6399858-6400557,
           6400927-6401120
          Length = 439

 Score = 29.9 bits (64), Expect = 2.7
 Identities = 12/23 (52%), Positives = 14/23 (60%)
 Frame = +2

Query: 596 CLQTKLEILDYCWRCRQYWAVSR 664
           CL T    +D CWRCR+ WA  R
Sbjct: 87  CLATNP--IDRCWRCRKDWATDR 107


>10_07_0132 +
           13263577-13263732,13265391-13265456,13265607-13265705,
           13267020-13267084,13267210-13267294,13267389-13267422,
           13267539-13267642,13268085-13268408,13269090-13269605
          Length = 482

 Score = 29.1 bits (62), Expect = 4.8
 Identities = 13/39 (33%), Positives = 23/39 (58%)
 Frame = +1

Query: 493 LTIHMRELGINVEETAIMSAVTPVVSIIMPPLAGMLADK 609
           LT +++ LGI    T++M    P+  +I+ P  G+ +DK
Sbjct: 47  LTPYVQTLGIPHALTSVMWLCGPIAGLIVQPCVGLYSDK 85


>06_01_0327 + 2377121-2377812,2377911-2378265
          Length = 348

 Score = 29.1 bits (62), Expect = 4.8
 Identities = 9/15 (60%), Positives = 10/15 (66%)
 Frame = +2

Query: 620 LDYCWRCRQYWAVSR 664
           +D CWRCR  WA  R
Sbjct: 6   IDRCWRCRDDWATDR 20


>06_01_0326 + 2372176-2373057,2373146-2373610
          Length = 448

 Score = 29.1 bits (62), Expect = 4.8
 Identities = 9/15 (60%), Positives = 11/15 (73%)
 Frame = +2

Query: 620 LDYCWRCRQYWAVSR 664
           +D CWRCR+ WA  R
Sbjct: 103 IDLCWRCRKNWASRR 117


>06_01_0322 - 2335577-2335931,2336030-2336991
          Length = 438

 Score = 29.1 bits (62), Expect = 4.8
 Identities = 9/15 (60%), Positives = 10/15 (66%)
 Frame = +2

Query: 620 LDYCWRCRQYWAVSR 664
           +D CWRCR  WA  R
Sbjct: 96  IDRCWRCRDDWATDR 110


>03_05_0001 -
           19386264-19386284,19386446-19386517,19386614-19387357,
           19387454-19388884,19388953-19389118,19392035-19392114,
           19392393-19392462,19392550-19392761,19392837-19392890,
           19393471-19393623,19393715-19393930,19394029-19394248,
           19394332-19394399,19394510-19394643,19394755-19394854,
           19394943-19395421,19395506-19395699,19396270-19396355,
           19396364-19396444,19396842-19397023,19397305-19397346,
           19398247-19398558,19399374-19399434,19399435-19399617,
           19399744-19399863,19400380-19401051,19402597-19402668,
           19402742-19402865,19403563-19403651,19405023-19405097
          Length = 2170

 Score = 28.7 bits (61), Expect = 6.3
 Identities = 17/53 (32%), Positives = 25/53 (47%), Gaps = 2/53 (3%)
 Frame = +3

Query: 345 LFGIHTNREDATNQVIFQKNNR*LEAEKIDSIKN--TVLRSCFNFVRVVSLLD 497
           LF I  N     + + F  N      E++ + K+  T+  SCF + R  SLLD
Sbjct: 286 LFDIWKNVNSIVDNITFDDNGLAFRLEELPTTKHLFTLFDSCFPYYRNCSLLD 338


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,419,299
Number of Sequences: 37544
Number of extensions: 460311
Number of successful extensions: 1119
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1091
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1119
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2420970504
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)