Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P08_F_J03
         (864 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ970248-1|CAI96720.1|  132|Anopheles gambiae putative reverse t...    25   3.0  
AJ970247-1|CAI96719.1|  132|Anopheles gambiae putative reverse t...    25   3.0  
AJ970246-1|CAI96718.1|  132|Anopheles gambiae putative reverse t...    25   3.0  
EF595743-1|ABQ88369.1| 1893|Anopheles gambiae voltage-gated calc...    24   6.9  

>AJ970248-1|CAI96720.1|  132|Anopheles gambiae putative reverse
           transcriptase protein.
          Length = 132

 Score = 25.0 bits (52), Expect = 3.0
 Identities = 8/23 (34%), Positives = 18/23 (78%)
 Frame = -3

Query: 841 SHMMKF*G*CHMNMDARVGMDIL 773
           +++M+F   CH ++DAR+ +D++
Sbjct: 46  TNLMQFVSSCHKSIDARLQVDVI 68


>AJ970247-1|CAI96719.1|  132|Anopheles gambiae putative reverse
           transcriptase protein.
          Length = 132

 Score = 25.0 bits (52), Expect = 3.0
 Identities = 8/23 (34%), Positives = 18/23 (78%)
 Frame = -3

Query: 841 SHMMKF*G*CHMNMDARVGMDIL 773
           +++M+F   CH ++DAR+ +D++
Sbjct: 46  TNLMQFVSSCHKSIDARLQVDVI 68


>AJ970246-1|CAI96718.1|  132|Anopheles gambiae putative reverse
           transcriptase protein.
          Length = 132

 Score = 25.0 bits (52), Expect = 3.0
 Identities = 8/23 (34%), Positives = 18/23 (78%)
 Frame = -3

Query: 841 SHMMKF*G*CHMNMDARVGMDIL 773
           +++M+F   CH ++DAR+ +D++
Sbjct: 46  TNLMQFVSSCHKSIDARLQVDVI 68


>EF595743-1|ABQ88369.1| 1893|Anopheles gambiae voltage-gated calcium
            channel alpha1 subunit protein.
          Length = 1893

 Score = 23.8 bits (49), Expect = 6.9
 Identities = 13/37 (35%), Positives = 19/37 (51%)
 Frame = -1

Query: 360  YEFQITKEDQIFTRTLSRKFFSHPAFLAKKREYLSLI 250
            +E+ I     I T TLS KF+  P    +  + L+LI
Sbjct: 1177 FEYMIFVLIMINTITLSMKFYRQPEIYTEVLDLLNLI 1213


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 916,934
Number of Sequences: 2352
Number of extensions: 18670
Number of successful extensions: 51
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 49
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 51
length of database: 563,979
effective HSP length: 64
effective length of database: 413,451
effective search space used: 92199573
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)