Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P08_F_J03
         (864 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC006679-8|AAK84470.1|  630|Caenorhabditis elegans Hypothetical ...    33   0.20 
AF026202-6|AAB71245.2|  594|Caenorhabditis elegans Hypothetical ...    31   1.4  
Z81099-3|CAB03186.3|  490|Caenorhabditis elegans Hypothetical pr...    29   3.2  
U70856-4|AAB09167.1| 2090|Caenorhabditis elegans Hypothetical pr...    29   3.2  
U70856-3|AAB09166.1| 2153|Caenorhabditis elegans Gei-4(four) int...    29   3.2  
U41105-12|AAA82406.1|  556|Caenorhabditis elegans Hypothetical p...    29   3.2  
Z92830-8|CAB07353.1|  537|Caenorhabditis elegans Hypothetical pr...    29   4.3  
AF024502-3|AAB70373.1|  836|Caenorhabditis elegans Hypothetical ...    29   5.7  

>AC006679-8|AAK84470.1|  630|Caenorhabditis elegans Hypothetical
           protein R13A5.9 protein.
          Length = 630

 Score = 33.5 bits (73), Expect = 0.20
 Identities = 17/78 (21%), Positives = 35/78 (44%)
 Frame = +1

Query: 481 LYPYLTIHMRELGINVEETAIMSAVTPVVSIIMPPLAGMLADKIGNFRLLLALSSVLGGI 660
           L+P L ++ ++LG+   +   +    P+V  +  P     A +    +LLL  S     +
Sbjct: 38  LFPLLAVYFKQLGMTAAQAGFLIGSRPIVEFLSGPFWSQFASRFRKQKLLLLFS-----L 92

Query: 661 SALLLLAVPVGRITITYP 714
            +L+L  + +G +    P
Sbjct: 93  GSLVLFTLGIGLVQPVTP 110


>AF026202-6|AAB71245.2|  594|Caenorhabditis elegans Hypothetical
           protein C10E2.6 protein.
          Length = 594

 Score = 30.7 bits (66), Expect = 1.4
 Identities = 15/42 (35%), Positives = 22/42 (52%)
 Frame = +1

Query: 562 VVSIIMPPLAGMLADKIGNFRLLLALSSVLGGISALLLLAVP 687
           V ++  PP++G LAD  GN+ L      V    S L+L  +P
Sbjct: 538 VGTVFGPPVSGYLADMTGNYTLSFVFCGVNLLASGLMLFGIP 579


>Z81099-3|CAB03186.3|  490|Caenorhabditis elegans Hypothetical
           protein K08F9.1 protein.
          Length = 490

 Score = 29.5 bits (63), Expect = 3.2
 Identities = 17/46 (36%), Positives = 28/46 (60%), Gaps = 1/46 (2%)
 Frame = +1

Query: 517 GINVEETAIMSAVTPVVSIIMPPLAGMLADKIGNFRLLL-ALSSVL 651
           G+NV + ++ +  T +VS+I   LA  + DK G   LLL +L+ +L
Sbjct: 299 GLNVLQASLANDATTIVSVISSVLAIAIIDKNGRRPLLLISLAGIL 344


>U70856-4|AAB09167.1| 2090|Caenorhabditis elegans Hypothetical protein
            F57F4.4 protein.
          Length = 2090

 Score = 29.5 bits (63), Expect = 3.2
 Identities = 13/33 (39%), Positives = 16/33 (48%)
 Frame = +2

Query: 578  CHPWLVCLQTKLEILDYCWRCRQYWAVSRPCCC 676
            C P  +C    LE+ D C R   Y+   R CCC
Sbjct: 1144 CVPHSLC--RSLELYDSCARMEPYYPEFRACCC 1174


>U70856-3|AAB09166.1| 2153|Caenorhabditis elegans Gei-4(four)
            interacting proteinprotein 1 protein.
          Length = 2153

 Score = 29.5 bits (63), Expect = 3.2
 Identities = 13/33 (39%), Positives = 16/33 (48%)
 Frame = +2

Query: 578  CHPWLVCLQTKLEILDYCWRCRQYWAVSRPCCC 676
            C P  +C    LE+ D C R   Y+   R CCC
Sbjct: 1144 CVPHSLC--RSLELYDSCARMEPYYPEFRACCC 1174


>U41105-12|AAA82406.1|  556|Caenorhabditis elegans Hypothetical
           protein T02G5.12 protein.
          Length = 556

 Score = 29.5 bits (63), Expect = 3.2
 Identities = 14/42 (33%), Positives = 23/42 (54%)
 Frame = +1

Query: 562 VVSIIMPPLAGMLADKIGNFRLLLALSSVLGGISALLLLAVP 687
           V ++I P ++G LAD  GN+ L      +   +S L+L  +P
Sbjct: 497 VGTVIGPLVSGYLADLTGNYTLSFVFCGINLMVSGLMLFVIP 538


>Z92830-8|CAB07353.1|  537|Caenorhabditis elegans Hypothetical
           protein F11A5.9 protein.
          Length = 537

 Score = 29.1 bits (62), Expect = 4.3
 Identities = 12/32 (37%), Positives = 19/32 (59%)
 Frame = +1

Query: 514 LGINVEETAIMSAVTPVVSIIMPPLAGMLADK 609
           +G  VE+T   SA+  +V+  +  +AG  ADK
Sbjct: 338 MGFAVEQTGTFSAIPQIVTFFLKVIAGYAADK 369


>AF024502-3|AAB70373.1|  836|Caenorhabditis elegans Hypothetical
           protein M151.3 protein.
          Length = 836

 Score = 28.7 bits (61), Expect = 5.7
 Identities = 14/37 (37%), Positives = 20/37 (54%)
 Frame = -2

Query: 677 NNNKAEIPPNTDDNANNSLKFPILSASIPAKGGIIMD 567
           NN + E PP    + N+ +K   L+  +PAK GI  D
Sbjct: 101 NNGRRETPPPAQQDVNSIIK-SFLTQMLPAKHGIPTD 136


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,206,344
Number of Sequences: 27780
Number of extensions: 442084
Number of successful extensions: 1128
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1063
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1127
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2160943708
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)