Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P08_F_J03
         (864 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.          24   2.1  
EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.      24   2.1  
DQ435324-1|ABD92639.1|  152|Apis mellifera OBP3 protein.               24   2.1  
DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               23   3.6  
AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    23   4.8  
AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein ...    22   6.3  
AB083010-1|BAC54131.1|  132|Apis mellifera fatty acid binding pr...    22   8.4  

>EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.
          Length = 684

 Score = 23.8 bits (49), Expect = 2.1
 Identities = 9/27 (33%), Positives = 16/27 (59%)
 Frame = -3

Query: 808 MNMDARVGMDILGYVGPSEQSHHRLLK 728
           +N D  +   I  ++GP   SHH+L++
Sbjct: 506 INADKPMKAAIRIFIGPKYDSHHKLIE 532


>EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.
          Length = 684

 Score = 23.8 bits (49), Expect = 2.1
 Identities = 9/27 (33%), Positives = 16/27 (59%)
 Frame = -3

Query: 808 MNMDARVGMDILGYVGPSEQSHHRLLK 728
           +N D  +   I  ++GP   SHH+L++
Sbjct: 506 INADKPMKAAIRIFIGPKYDSHHKLIE 532


>DQ435324-1|ABD92639.1|  152|Apis mellifera OBP3 protein.
          Length = 152

 Score = 23.8 bits (49), Expect = 2.1
 Identities = 14/35 (40%), Positives = 18/35 (51%)
 Frame = +1

Query: 115 KKK*KCTRSLKTKSNVIDKVYFKI*QFCDKNSISN 219
           K + KC  + K    VID V F I Q+   N+ SN
Sbjct: 106 KNEDKCLTAQKFSRCVIDYVKFHITQYMISNANSN 140


>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 23.0 bits (47), Expect = 3.6
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = +2

Query: 581 HPWLVCLQTKLEILDY 628
           HPWL  L+ +L+ L Y
Sbjct: 544 HPWLPLLRNRLDTLIY 559


>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 22.6 bits (46), Expect = 4.8
 Identities = 9/26 (34%), Positives = 16/26 (61%)
 Frame = -2

Query: 731 KSSTSVGYVIVILPTGTANNNKAEIP 654
           +S T+ G V  +    T+NN++ +IP
Sbjct: 715 QSLTTTGNVSYLTTNNTSNNSQLQIP 740


>AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein 1
           protein.
          Length = 500

 Score = 22.2 bits (45), Expect = 6.3
 Identities = 10/29 (34%), Positives = 16/29 (55%)
 Frame = +2

Query: 50  HYRSHTRIIKYRFIPNSYTFIIRRSKSAH 136
           HYR+HT    Y+    S +F ++ + S H
Sbjct: 110 HYRTHTGEKPYQCEYCSKSFSVKENLSVH 138


>AB083010-1|BAC54131.1|  132|Apis mellifera fatty acid binding
           protein protein.
          Length = 132

 Score = 21.8 bits (44), Expect = 8.4
 Identities = 8/23 (34%), Positives = 15/23 (65%)
 Frame = +1

Query: 505 MRELGINVEETAIMSAVTPVVSI 573
           M+ LG+ +    + S+V+PVV +
Sbjct: 21  MKALGVGIMTRKVGSSVSPVVEL 43


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 253,545
Number of Sequences: 438
Number of extensions: 6198
Number of successful extensions: 9
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 27916710
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)