Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P08_F_J02
         (883 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1B3.05 |||CCR4-Not complex subunit Not3/5 |Schizosaccharomyc...    36   0.006
SPBC26H8.13c |||sequence orphan|Schizosaccharomyces pombe|chr 2|...    27   2.7  
SPAC1610.03c |crp79|meu5|poly|Schizosaccharomyces pombe|chr 1|||...    27   4.7  
SPAPB1A10.08 |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    26   6.2  
SPAC1486.05 |nup189||nucleoporin Nup189|Schizosaccharomyces pomb...    26   6.2  
SPAC26H5.09c |||GFO/IDH/MocA family oxidoreductase|Schizosacchar...    26   6.2  
SPCC1795.03 |gms1||UDP-galactose transporter Gms1|Schizosaccharo...    26   8.2  
SPAC7D4.04 |taf1||Taz1 interacting factor 1|Schizosaccharomyces ...    26   8.2  

>SPAC1B3.05 |||CCR4-Not complex subunit Not3/5 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 630

 Score = 36.3 bits (80), Expect = 0.006
 Identities = 20/48 (41%), Positives = 26/48 (54%), Gaps = 2/48 (4%)
 Frame = +3

Query: 348 VYIPDRRRQTLADTSYVPQQENEV--YYPQQPENPIFSPTQATELADP 485
           VY+PD          Y+P+    V  YYPQQP  P+F  ++ TEL DP
Sbjct: 497 VYVPDAT-DAAKPQYYIPKDPYPVPHYYPQQPL-PLFDSSEMTELVDP 542


>SPBC26H8.13c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 124

 Score = 27.5 bits (58), Expect = 2.7
 Identities = 9/28 (32%), Positives = 13/28 (46%)
 Frame = -3

Query: 788 TCAVCVGNCGRASGTTCGPTSPSEEHWE 705
           TCA+C+  C +     C   S  E  +E
Sbjct: 83  TCAICIRQCHKCESNVCSMCSKQERTFE 110


>SPAC1610.03c |crp79|meu5|poly|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 710

 Score = 26.6 bits (56), Expect = 4.7
 Identities = 12/24 (50%), Positives = 15/24 (62%)
 Frame = +1

Query: 157 KRIPTIPTMETWTPFPTARAIVTE 228
           K IPT PT E+  PFP+  A  T+
Sbjct: 286 KSIPTTPTGESLWPFPSENANKTQ 309


>SPAPB1A10.08 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 412

 Score = 26.2 bits (55), Expect = 6.2
 Identities = 12/47 (25%), Positives = 22/47 (46%)
 Frame = +1

Query: 313 SPKPHRRLQRARCTYLIVAARPLPIPATYRNKKTKSITLSNQRTRSS 453
           S   H    +    + +++   +P+P  YR    +  TLSN++T  S
Sbjct: 45  SQDTHSCASKQDAVFQLLSETKIPVPNRYRKISHRLSTLSNKKTLKS 91


>SPAC1486.05 |nup189||nucleoporin Nup189|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1778

 Score = 26.2 bits (55), Expect = 6.2
 Identities = 11/30 (36%), Positives = 16/30 (53%)
 Frame = -3

Query: 554 SGRRFGSLGNRYQSGGVQFDLFSGVSQFGR 465
           +G  FG+  N   +GG  F + SG   FG+
Sbjct: 64  NGGLFGNRNNTTTTGGTGFGMSSGTGMFGQ 93


>SPAC26H5.09c |||GFO/IDH/MocA family
           oxidoreductase|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 369

 Score = 26.2 bits (55), Expect = 6.2
 Identities = 12/37 (32%), Positives = 20/37 (54%)
 Frame = +3

Query: 279 VGGGMAAFMYRQPEAAQAPSTGQVYIPDRRRQTLADT 389
           +G GM+AF++  P     P+  +VY    RR T  ++
Sbjct: 9   LGTGMSAFIFHYPFLKALPNHFEVYAAWERRATSTES 45


>SPCC1795.03 |gms1||UDP-galactose transporter
           Gms1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 353

 Score = 25.8 bits (54), Expect = 8.2
 Identities = 11/22 (50%), Positives = 15/22 (68%)
 Frame = +3

Query: 294 AAFMYRQPEAAQAPSTGQVYIP 359
           A F+Y +PE+  +PS G  YIP
Sbjct: 318 ATFLYTKPESKPSPSRG-TYIP 338


>SPAC7D4.04 |taf1||Taz1 interacting factor 1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 926

 Score = 25.8 bits (54), Expect = 8.2
 Identities = 12/32 (37%), Positives = 19/32 (59%)
 Frame = -2

Query: 765 LRSGLRDHLRPYLPIRRTLGRTRMWALWVVRS 670
           LR+  +  L  +LP RRT G  ++WA + V +
Sbjct: 838 LRNFKQGSLVLFLPTRRTAGNKKVWAAFNVNA 869


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,209,389
Number of Sequences: 5004
Number of extensions: 63913
Number of successful extensions: 219
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 206
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 219
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 442483990
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)