Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P08_F_J02
         (883 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF003130-1|AAB54124.2|  423|Caenorhabditis elegans Hypothetical ...    37   0.022
Z74032-2|CAA98466.2|  248|Caenorhabditis elegans Hypothetical pr...    35   0.067
Z81044-5|CAE17706.2|  460|Caenorhabditis elegans Hypothetical pr...    32   0.62 
Z83223-4|CAB05716.2|  534|Caenorhabditis elegans Hypothetical pr...    31   0.83 
Z12018-1|CAD88219.2|  774|Caenorhabditis elegans Hypothetical pr...    30   2.5  
Z11126-8|CAD88221.2|  774|Caenorhabditis elegans Hypothetical pr...    30   2.5  
AL132862-12|CAB60542.1|  380|Caenorhabditis elegans Hypothetical...    29   3.3  
AC024772-3|AAF60538.1| 2344|Caenorhabditis elegans Hypothetical ...    29   4.4  
Z81587-6|CAB04704.1|  417|Caenorhabditis elegans Hypothetical pr...    29   5.8  
Z74046-1|CAA98556.2|  178|Caenorhabditis elegans Hypothetical pr...    29   5.8  
U97196-12|AAB52456.2|  564|Caenorhabditis elegans Hypothetical p...    29   5.8  
U80453-11|AAN63452.2|  503|Caenorhabditis elegans Hypothetical p...    29   5.8  
U80453-10|AAN63453.1|  489|Caenorhabditis elegans Hypothetical p...    29   5.8  
U80453-9|AAT81206.1|  432|Caenorhabditis elegans Hypothetical pr...    29   5.8  
Z81133-5|CAB03442.2| 1838|Caenorhabditis elegans Hypothetical pr...    28   7.7  
Z81042-1|CAB02795.1| 1657|Caenorhabditis elegans Hypothetical pr...    28   7.7  
L13200-7|AAA28189.1|  206|Caenorhabditis elegans Prion-like-(q/n...    28   7.7  

>AF003130-1|AAB54124.2|  423|Caenorhabditis elegans Hypothetical
           protein F55A12.6 protein.
          Length = 423

 Score = 36.7 bits (81), Expect = 0.022
 Identities = 22/57 (38%), Positives = 28/57 (49%), Gaps = 3/57 (5%)
 Frame = +3

Query: 162 YPYNPYYGNVDSLSYGSGDSNR--GGLVMSRYYNPYYN-PRAVGGGMAAFMYRQPEA 323
           Y  N YYGN     YG+G  N+  GG   + YYN YYN     GG    + Y Q ++
Sbjct: 138 YYGNGYYGNGYGNGYGNGYYNQYNGGYGGNGYYNQYYNGNNYYGGNRGYYNYNQGQS 194


>Z74032-2|CAA98466.2|  248|Caenorhabditis elegans Hypothetical
           protein F35B12.3 protein.
          Length = 248

 Score = 35.1 bits (77), Expect = 0.067
 Identities = 31/113 (27%), Positives = 46/113 (40%), Gaps = 3/113 (2%)
 Frame = +3

Query: 129 VMMSCALLVQAYPYNPYYGNVDSLSYGSGDSNRGGLVMSRYYNPYY-NPRAVGG--GMAA 299
           +++SC +L  AYPY+  YGN D   Y              Y   Y  NP   GG  G   
Sbjct: 7   LVVSCGILAAAYPYSQQYGNYDQ-QYSQQSQYYPSSGQQGYRGGYQSNPGMQGGYQGNGQ 65

Query: 300 FMYRQPEAAQAPSTGQVYIPDRRRQTLADTSYVPQQENEVYYPQQPENPIFSP 458
             Y+  +  Q    GQ     R  Q      Y   Q ++  YP++ ++ ++SP
Sbjct: 66  DSYQDFQGYQGYQRGQG--GQRGYQ-----GYQSNQRSQGSYPERYDSSMYSP 111


>Z81044-5|CAE17706.2|  460|Caenorhabditis elegans Hypothetical
           protein C30H6.11 protein.
          Length = 460

 Score = 31.9 bits (69), Expect = 0.62
 Identities = 27/115 (23%), Positives = 36/115 (31%), Gaps = 2/115 (1%)
 Frame = +1

Query: 169 TIPTMETWTPFPTARAIVTEEAWS*AVTTILT--TTPELWAVVWPRSCTASPKPHRRLQR 342
           T+PT  T TP  T     T    +   TT  T  TT        P + T +         
Sbjct: 215 TVPTTTTTTPTTTTTTTTTPTTTTTTPTTTTTPATTTSETTTTTPTTTTQTTTKPTTTTT 274

Query: 343 ARCTYLIVAARPLPIPATYRNKKTKSITLSNQRTRSSAPLKRPNWLTPLKRSNCT 507
              T       P     T +  K+ + T    +T S+         TP   S CT
Sbjct: 275 TPTTTPTTTTTPTTTTTTAKTTKSTTTTTKTTKTTSTPTTTTTTPKTPFDTSKCT 329


>Z83223-4|CAB05716.2|  534|Caenorhabditis elegans Hypothetical
           protein E01G4.4 protein.
          Length = 534

 Score = 31.5 bits (68), Expect = 0.83
 Identities = 18/61 (29%), Positives = 29/61 (47%)
 Frame = +3

Query: 261 YYNPRAVGGGMAAFMYRQPEAAQAPSTGQVYIPDRRRQTLADTSYVPQQENEVYYPQQPE 440
           Y NP+A  G    +  +Q +    P     Y P R++Q     +Y P+Q+ +  Y QQ +
Sbjct: 27  YQNPQAGYG----YNNQQQQQQGRPQQYAGYPPQRQQQQYNMNAYAPRQQQQQQYQQQQQ 82

Query: 441 N 443
           N
Sbjct: 83  N 83


>Z12018-1|CAD88219.2|  774|Caenorhabditis elegans Hypothetical
           protein ZK643.8 protein.
          Length = 774

 Score = 29.9 bits (64), Expect = 2.5
 Identities = 16/43 (37%), Positives = 21/43 (48%), Gaps = 1/43 (2%)
 Frame = +1

Query: 691 PHPRSSQCSSDG-EVGPQVVPEARPQLPTHTAQVEEASPXAXP 816
           P P ++  SS G   G +  PEA P  P+      EA+P A P
Sbjct: 456 PAPEAAPASSGGYSGGSEAAPEAAPAAPSGGYSGSEAAPEAAP 498


>Z11126-8|CAD88221.2|  774|Caenorhabditis elegans Hypothetical
           protein ZK643.8 protein.
          Length = 774

 Score = 29.9 bits (64), Expect = 2.5
 Identities = 16/43 (37%), Positives = 21/43 (48%), Gaps = 1/43 (2%)
 Frame = +1

Query: 691 PHPRSSQCSSDG-EVGPQVVPEARPQLPTHTAQVEEASPXAXP 816
           P P ++  SS G   G +  PEA P  P+      EA+P A P
Sbjct: 456 PAPEAAPASSGGYSGGSEAAPEAAPAAPSGGYSGSEAAPEAAP 498


>AL132862-12|CAB60542.1|  380|Caenorhabditis elegans Hypothetical
           protein Y73F8A.17 protein.
          Length = 380

 Score = 29.5 bits (63), Expect = 3.3
 Identities = 12/29 (41%), Positives = 14/29 (48%)
 Frame = +3

Query: 126 FVMMSCALLVQAYPYNPYYGNVDSLSYGS 212
           F M   A     YPY+PYY     L +GS
Sbjct: 311 FAMNQKASFANQYPYHPYYHQYSQLDHGS 339


>AC024772-3|AAF60538.1| 2344|Caenorhabditis elegans Hypothetical
            protein Y40C5A.3 protein.
          Length = 2344

 Score = 29.1 bits (62), Expect = 4.4
 Identities = 13/36 (36%), Positives = 18/36 (50%)
 Frame = +3

Query: 393  YVPQQENEVYYPQQPENPIFSPTQATELADPTEKIE 500
            YVPQ+      P  PE    +P+Q   + +PT  IE
Sbjct: 1812 YVPQETQAPIAPSNPEPVQPNPSQTVSIPEPTGNIE 1847


>Z81587-6|CAB04704.1|  417|Caenorhabditis elegans Hypothetical
           protein T06G6.8 protein.
          Length = 417

 Score = 28.7 bits (61), Expect = 5.8
 Identities = 22/104 (21%), Positives = 43/104 (41%)
 Frame = +1

Query: 160 RIPTIPTMETWTPFPTARAIVTEEAWS*AVTTILTTTPELWAVVWPRSCTASPKPHRRLQ 339
           R   +PT   W    T   + T+ + + ++T+  TTT +L       + T    P    +
Sbjct: 217 RSSKLPTSSVWKATTTPSDLPTKPSRTRSLTSTSTTTAKLPTT----TSTTFAAPQASTE 272

Query: 340 RARCTYLIVAARPLPIPATYRNKKTKSITLSNQRTRSSAPLKRP 471
            +  T  +  A P  +P     ++  +IT   ++  S++  K P
Sbjct: 273 PSEATEALATATPADLPTKPSGREITTIT-GTRKLSSTSTTKLP 315


>Z74046-1|CAA98556.2|  178|Caenorhabditis elegans Hypothetical
           protein ZC116.1 protein.
          Length = 178

 Score = 28.7 bits (61), Expect = 5.8
 Identities = 20/66 (30%), Positives = 29/66 (43%), Gaps = 2/66 (3%)
 Frame = +3

Query: 249 YYNPYYN--PRAVGGGMAAFMYRQPEAAQAPSTGQVYIPDRRRQTLADTSYVPQQENEVY 422
           YY PYY   P A   G    + +Q +A  A          ++ Q  A  +   QQ+ + Y
Sbjct: 25  YYTPYYYYYPTAAVAGTTG-VAQQTQAGGASQQAYAQQQPQQNQQYAQGT---QQQQQQY 80

Query: 423 YPQQPE 440
           YPQQ +
Sbjct: 81  YPQQTQ 86


>U97196-12|AAB52456.2|  564|Caenorhabditis elegans Hypothetical
           protein B0207.1 protein.
          Length = 564

 Score = 28.7 bits (61), Expect = 5.8
 Identities = 22/77 (28%), Positives = 30/77 (38%), Gaps = 2/77 (2%)
 Frame = +3

Query: 255 NPYYNPRAVGGGMAAFMYRQPEAAQAPSTGQVYIPDRRRQTLADTSYVPQQENEVYY--P 428
           NP  NP  +  G+       P   Q P    V  P   R    + + V Q +  V    P
Sbjct: 63  NPVQNPNKLSTGLPPMTMMLPPTVQEPLPTPVKTPPLPRPP-GNLNPVQQPQIPVQRTPP 121

Query: 429 QQPENPIFSPTQATELA 479
           Q P  P+  P Q T++A
Sbjct: 122 QCPPPPVPHPPQITQMA 138


>U80453-11|AAN63452.2|  503|Caenorhabditis elegans Hypothetical
           protein C23H3.9a protein.
          Length = 503

 Score = 28.7 bits (61), Expect = 5.8
 Identities = 21/60 (35%), Positives = 27/60 (45%), Gaps = 7/60 (11%)
 Frame = +1

Query: 169 TIPTMETWTPFPTA-----RAIVTEEAWS*AVTTILTTTPEL--WAVVWPRSCTASPKPH 327
           T  T  T TP PT          TE   +   T   TTTP++  WA +W  + TA PK +
Sbjct: 216 TATTTTTTTPLPTTTTTQPTTTTTEPTTTTTTTEPTTTTPKVNSWAKLW--TSTAEPKSY 273


>U80453-10|AAN63453.1|  489|Caenorhabditis elegans Hypothetical
           protein C23H3.9b protein.
          Length = 489

 Score = 28.7 bits (61), Expect = 5.8
 Identities = 21/60 (35%), Positives = 27/60 (45%), Gaps = 7/60 (11%)
 Frame = +1

Query: 169 TIPTMETWTPFPTA-----RAIVTEEAWS*AVTTILTTTPEL--WAVVWPRSCTASPKPH 327
           T  T  T TP PT          TE   +   T   TTTP++  WA +W  + TA PK +
Sbjct: 212 TATTTTTTTPLPTTTTTQPTTTTTEPTTTTTTTEPTTTTPKVNSWAKLW--TSTAEPKSY 269


>U80453-9|AAT81206.1|  432|Caenorhabditis elegans Hypothetical
           protein C23H3.9d protein.
          Length = 432

 Score = 28.7 bits (61), Expect = 5.8
 Identities = 21/60 (35%), Positives = 27/60 (45%), Gaps = 7/60 (11%)
 Frame = +1

Query: 169 TIPTMETWTPFPTA-----RAIVTEEAWS*AVTTILTTTPEL--WAVVWPRSCTASPKPH 327
           T  T  T TP PT          TE   +   T   TTTP++  WA +W  + TA PK +
Sbjct: 155 TATTTTTTTPLPTTTTTQPTTTTTEPTTTTTTTEPTTTTPKVNSWAKLW--TSTAEPKSY 212


>Z81133-5|CAB03442.2| 1838|Caenorhabditis elegans Hypothetical protein
            T28B8.3a protein.
          Length = 1838

 Score = 28.3 bits (60), Expect = 7.7
 Identities = 14/26 (53%), Positives = 16/26 (61%)
 Frame = +1

Query: 217  IVTEEAWS*AVTTILTTTPELWAVVW 294
            I  EEAWS A+ TIL  T +L  V W
Sbjct: 1431 IEAEEAWSIAMETILDPTSDLRRVWW 1456


>Z81042-1|CAB02795.1| 1657|Caenorhabditis elegans Hypothetical
           protein C27H6.1 protein.
          Length = 1657

 Score = 28.3 bits (60), Expect = 7.7
 Identities = 18/49 (36%), Positives = 22/49 (44%), Gaps = 1/49 (2%)
 Frame = +1

Query: 691 PHPRSSQCSSDGEVGPQVVPEARPQLP-THTAQVEEASPXAXPPXTVDP 834
           P P +S  SS G   P   P ARP+ P      V+ A+P   PP    P
Sbjct: 673 PTPEAS--SSTGTSAPARPPPARPEAPKKDETAVDAAAPPRPPPAARPP 719


>L13200-7|AAA28189.1|  206|Caenorhabditis elegans
           Prion-like-(q/n-rich)-domain-bearingprotein protein 96
           protein.
          Length = 206

 Score = 28.3 bits (60), Expect = 7.7
 Identities = 12/27 (44%), Positives = 15/27 (55%)
 Frame = +3

Query: 399 PQQENEVYYPQQPENPIFSPTQATELA 479
           PQQ+   Y PQQP +PI     A  +A
Sbjct: 6   PQQQQPGYQPQQPSHPIVGAGAAPTMA 32


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,336,915
Number of Sequences: 27780
Number of extensions: 390242
Number of successful extensions: 1422
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 1307
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1415
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2223883816
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)