Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P08_F_J02
         (883 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY398690-1|AAR83734.1|  416|Apis mellifera major royal jelly pro...    23   3.7  
EF127805-1|ABL67942.1|  461|Apis mellifera nicotinic acetylcholi...    23   4.9  
EF127804-1|ABL67941.1|  461|Apis mellifera nicotinic acetylcholi...    23   4.9  
EF127803-1|ABL67940.1|  461|Apis mellifera nicotinic acetylcholi...    23   4.9  
EF127802-1|ABL67939.1|  461|Apis mellifera nicotinic acetylcholi...    23   4.9  
EF127801-1|ABL67938.1|  461|Apis mellifera nicotinic acetylcholi...    23   4.9  
EF127800-1|ABL67937.1|  461|Apis mellifera nicotinic acetylcholi...    23   4.9  
DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic acetylcholi...    23   4.9  
DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic acetylcholi...    23   4.9  
DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related pro...    22   8.6  

>AY398690-1|AAR83734.1|  416|Apis mellifera major royal jelly
           protein 8 protein.
          Length = 416

 Score = 23.0 bits (47), Expect = 3.7
 Identities = 9/23 (39%), Positives = 14/23 (60%)
 Frame = -2

Query: 792 LDLCCMRWQLRSGLRDHLRPYLP 724
           +D+C   W L SGL +++R   P
Sbjct: 127 IDMCDRLWVLDSGLINNVRSVCP 149


>EF127805-1|ABL67942.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 6 protein.
          Length = 461

 Score = 22.6 bits (46), Expect = 4.9
 Identities = 11/29 (37%), Positives = 19/29 (65%)
 Frame = +1

Query: 1   RPADVDKLDSSIPLSTL*RPKGIKTVLKQ 87
           RPA V+   +S+PLS +   + + T+LK+
Sbjct: 378 RPATVEDTSASLPLSGM--QEELHTILKE 404


>EF127804-1|ABL67941.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 5 protein.
          Length = 461

 Score = 22.6 bits (46), Expect = 4.9
 Identities = 11/29 (37%), Positives = 19/29 (65%)
 Frame = +1

Query: 1   RPADVDKLDSSIPLSTL*RPKGIKTVLKQ 87
           RPA V+   +S+PLS +   + + T+LK+
Sbjct: 378 RPATVEDTSASLPLSGM--QEELHTILKE 404


>EF127803-1|ABL67940.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 4 protein.
          Length = 461

 Score = 22.6 bits (46), Expect = 4.9
 Identities = 11/29 (37%), Positives = 19/29 (65%)
 Frame = +1

Query: 1   RPADVDKLDSSIPLSTL*RPKGIKTVLKQ 87
           RPA V+   +S+PLS +   + + T+LK+
Sbjct: 378 RPATVEDTSASLPLSGM--QEELHTILKE 404


>EF127802-1|ABL67939.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 3 protein.
          Length = 461

 Score = 22.6 bits (46), Expect = 4.9
 Identities = 11/29 (37%), Positives = 19/29 (65%)
 Frame = +1

Query: 1   RPADVDKLDSSIPLSTL*RPKGIKTVLKQ 87
           RPA V+   +S+PLS +   + + T+LK+
Sbjct: 378 RPATVEDTSASLPLSGM--QEELHTILKE 404


>EF127801-1|ABL67938.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 2 protein.
          Length = 461

 Score = 22.6 bits (46), Expect = 4.9
 Identities = 11/29 (37%), Positives = 19/29 (65%)
 Frame = +1

Query: 1   RPADVDKLDSSIPLSTL*RPKGIKTVLKQ 87
           RPA V+   +S+PLS +   + + T+LK+
Sbjct: 378 RPATVEDTSASLPLSGM--QEELHTILKE 404


>EF127800-1|ABL67937.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 1 protein.
          Length = 461

 Score = 22.6 bits (46), Expect = 4.9
 Identities = 11/29 (37%), Positives = 19/29 (65%)
 Frame = +1

Query: 1   RPADVDKLDSSIPLSTL*RPKGIKTVLKQ 87
           RPA V+   +S+PLS +   + + T+LK+
Sbjct: 378 RPATVEDTSASLPLSGM--QEELHTILKE 404


>DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic acetylcholine
           receptor alpha6subunit protein.
          Length = 529

 Score = 22.6 bits (46), Expect = 4.9
 Identities = 11/29 (37%), Positives = 19/29 (65%)
 Frame = +1

Query: 1   RPADVDKLDSSIPLSTL*RPKGIKTVLKQ 87
           RPA V+   +S+PLS +   + + T+LK+
Sbjct: 446 RPATVEDTSASLPLSGM--QEELHTILKE 472


>DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic acetylcholine
           receptor alpha6subunit protein.
          Length = 529

 Score = 22.6 bits (46), Expect = 4.9
 Identities = 11/29 (37%), Positives = 19/29 (65%)
 Frame = +1

Query: 1   RPADVDKLDSSIPLSTL*RPKGIKTVLKQ 87
           RPA V+   +S+PLS +   + + T+LK+
Sbjct: 446 RPATVEDTSASLPLSGM--QEELHTILKE 472


>DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related
           protein STG-1 protein.
          Length = 397

 Score = 21.8 bits (44), Expect = 8.6
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = +3

Query: 360 DRRRQTLADTSYVPQQENEVYYP 428
           D   QT++ T+ V Q+E E Y P
Sbjct: 338 DLTTQTVSTTADVLQEEEEEYSP 360


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 230,201
Number of Sequences: 438
Number of extensions: 5422
Number of successful extensions: 16
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 28644972
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)