Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P08_F_J01
(882 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_04_0211 - 23636377-23636532,23636624-23636805,23637853-236379... 107 2e-23
02_04_0433 - 22891261-22891509,22892181-22892301,22892405-228924... 103 1e-22
02_04_0071 + 19457502-19458092,19458558-19458723,19458816-194590... 33 0.30
03_02_0796 - 11251958-11251971,11252220-11252301,11252420-112525... 30 2.8
02_02_0470 - 10700092-10700505 30 2.8
08_01_0897 - 8839134-8839718 29 3.7
04_03_0849 + 20265511-20265984,20266452-20266617,20266694-202669... 29 3.7
02_03_0307 + 17546263-17546299,17546522-17548018,17548859-175489... 29 3.7
10_08_0951 - 21769342-21769752 29 6.5
12_01_0736 + 6582371-6585370 28 8.6
12_01_0718 + 6339982-6342981 28 8.6
01_03_0130 + 12853325-12853948,12854657-12854822,12854907-128551... 28 8.6
>04_04_0211 -
23636377-23636532,23636624-23636805,23637853-23637959,
23637997-23638280
Length = 242
Score = 107 bits (256), Expect = 2e-23
Identities = 75/171 (43%), Positives = 98/171 (57%), Gaps = 4/171 (2%)
Frame = +3
Query: 378 PTQEKIRASSGGRPFS--KHVRRIRPNLKIGTVCILLAGRHAGKRVVLVGILPSGLLLVT 551
PT+ + +SS FS + + +R ++ GTV ILLAGR GKRVV + L SGLLLVT
Sbjct: 71 PTKLRSPSSSNLPEFSLFRFILLMRSSITPGTVLILLAGRFMGKRVVFLKQLKSGLLLVT 130
Query: 552 GPFAFNSCPLRRIPQRYVICTSTRISLGNFKLPKHFNDDYFXXXXXXXXXXXXXXEGDDI 731
GPF N P+RR+ Q YVI TST++ + + K F+D YF EG ++
Sbjct: 131 GPFKINGVPIRRVNQPYVIATSTKVDISGVNVEK-FDDKYF---SRDKKQKAKKTEG-EL 185
Query: 732 FATKKE--KYVPSEQRKTDXXTVDEAVIKAIGARPDKKVLRGYLKAAFGLR 878
F T+KE K +P E +K D VD +IKAI A PD L+ YL A F LR
Sbjct: 186 FETEKEATKNLP-EFKKEDQKVVDAELIKAIEAVPD---LKTYLGARFSLR 232
>02_04_0433 -
22891261-22891509,22892181-22892301,22892405-22892496,
22892692-22892755,22892855-22892920,22893102-22893193,
22893991-22894050,22894181-22894270,22894484-22894613,
22895066-22895157,22895299-22895373,22895663-22895754,
22896496-22896586,22897541-22897574,22897745-22897791,
22899110-22899209,22899300-22899436,22900837-22901015,
22901146-22901188,22901264-22901297,22901839-22901948,
22902043-22902224,22903062-22903168,22903266-22903480
Length = 833
Score = 103 bits (248), Expect = 1e-22
Identities = 75/182 (41%), Positives = 98/182 (53%), Gaps = 7/182 (3%)
Frame = +3
Query: 327 KNGGTRTVPLK----RRKSFYPTQE-KIRASSGGRPFSKHVRRIRPNLKIGTVCILLAGR 491
KNGGT K FYP + K RA S + + ++R + GTV ILLAGR
Sbjct: 31 KNGGTFPKAGKPAAAAEPKFYPADDVKPRAPSTRKA---NPTKLRSTITPGTVLILLAGR 87
Query: 492 HAGKRVVLVGILPSGLLLVTGPFAFNSCPLRRIPQRYVICTSTRISLGNFKLPKHFNDDY 671
+ GKRVV + L SGLLL+TGPF N P+RR+ Q YVI TST++ + K+ K F+D Y
Sbjct: 88 YMGKRVVFLKQLKSGLLLITGPFKINGVPIRRVNQAYVIATSTKVDISGVKVDK-FDDKY 146
Query: 672 FXXXXXXXXXXXXXXEGDDIFATKKE--KYVPSEQRKTDXXTVDEAVIKAIGARPDKKVL 845
F EG ++F T+KE K +P + +K D VD +IKAI PD K
Sbjct: 147 F---ARDKKAKAKKTEG-ELFETEKEATKNLP-DFKKDDQKAVDAELIKAIEVVPDLKSY 201
Query: 846 RG 851
G
Sbjct: 202 LG 203
>02_04_0071 +
19457502-19458092,19458558-19458723,19458816-19459027,
19460103-19460596,19460682-19460730,19460886-19461194
Length = 606
Score = 33.1 bits (72), Expect = 0.30
Identities = 17/37 (45%), Positives = 20/37 (54%), Gaps = 2/37 (5%)
Frame = +1
Query: 58 WNIIV--DPSNK*WLQHSLKRWPSLLPQLQVR*LKKN 162
W II DP N W H+ WP+LL QL V +K N
Sbjct: 477 WKIITGSDPKNTPWSYHNGGSWPTLLWQLTVASIKMN 513
>03_02_0796 -
11251958-11251971,11252220-11252301,11252420-11252500,
11252892-11253004,11253081-11253177,11253525-11253839,
11253936-11253984,11254148-11254641,11254772-11254836,
11255074-11255239,11257016-11257654
Length = 704
Score = 29.9 bits (64), Expect = 2.8
Identities = 16/46 (34%), Positives = 21/46 (45%), Gaps = 2/46 (4%)
Frame = +1
Query: 37 PFSSFSCWNIIV--DPSNK*WLQHSLKRWPSLLPQLQVR*LKKNLR 168
P + W II DP N W H+ WP+LL Q + +K R
Sbjct: 437 PALEYEEWRIITGSDPKNTPWSYHNGGSWPTLLWQFTLACIKMGRR 482
>02_02_0470 - 10700092-10700505
Length = 137
Score = 29.9 bits (64), Expect = 2.8
Identities = 13/28 (46%), Positives = 18/28 (64%)
Frame = +3
Query: 453 LKIGTVCILLAGRHAGKRVVLVGILPSG 536
LK G ILL GR+AG++ V+V + G
Sbjct: 5 LKPGKAVILLQGRYAGRKAVIVRVFEEG 32
>08_01_0897 - 8839134-8839718
Length = 194
Score = 29.5 bits (63), Expect = 3.7
Identities = 20/53 (37%), Positives = 26/53 (49%)
Frame = -3
Query: 877 RSPKAALRYPRSTFLSGRAPMALITASSTVX*SVLRCSDGTYFSFFVAKMSSP 719
R+ +AA+R +T S + AL A S S+L C DG S F SSP
Sbjct: 22 RAARAAVRIAATTTASSPSSPALAAALSRTP-SLLDCMDGDDDSIFYTPASSP 73
>04_03_0849 +
20265511-20265984,20266452-20266617,20266694-20266905,
20267154-20267647,20267732-20267780,20267922-20268251
Length = 574
Score = 29.5 bits (63), Expect = 3.7
Identities = 15/35 (42%), Positives = 18/35 (51%), Gaps = 2/35 (5%)
Frame = +1
Query: 58 WNIIV--DPSNK*WLQHSLKRWPSLLPQLQVR*LK 156
W I DP N W H+ WP+LL QL V +K
Sbjct: 438 WKFITGSDPKNTAWSYHNGGSWPTLLWQLTVACIK 472
>02_03_0307 +
17546263-17546299,17546522-17548018,17548859-17548949,
17549054-17549621,17550591-17550670,17550993-17551077,
17551172-17551263,17551355-17551423,17551587-17551655,
17552217-17552510,17552761-17552797,17552883-17552972,
17553520-17553585,17553704-17553818,17553902-17553940,
17554519-17554700
Length = 1136
Score = 29.5 bits (63), Expect = 3.7
Identities = 15/42 (35%), Positives = 21/42 (50%)
Frame = +1
Query: 586 AFLSAM*SAPPPEFHSATSNCQNTSMMITSRRIRSASNVQSN 711
AFL+ + PP + H C N S++I R + N QSN
Sbjct: 544 AFLNLVAKFPPTKRHINAEACSNLSLLIDDMRRKLNLNEQSN 585
>10_08_0951 - 21769342-21769752
Length = 136
Score = 28.7 bits (61), Expect = 6.5
Identities = 13/28 (46%), Positives = 17/28 (60%)
Frame = +3
Query: 453 LKIGTVCILLAGRHAGKRVVLVGILPSG 536
LK G ILL GR AG++ V+V + G
Sbjct: 5 LKPGKAVILLQGRFAGRKAVIVRVFEEG 32
>12_01_0736 + 6582371-6585370
Length = 999
Score = 28.3 bits (60), Expect = 8.6
Identities = 19/43 (44%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
Frame = +1
Query: 37 PFSSFSCWNI-IVDPSNK*WLQHSLKRWPSLLPQLQVR*LKKN 162
P S +C N+ I+D N + S W S LPQLQV LK N
Sbjct: 702 PRSLVACRNLEILDIGNN-QISDSFPCWMSKLPQLQVLVLKSN 743
>12_01_0718 + 6339982-6342981
Length = 999
Score = 28.3 bits (60), Expect = 8.6
Identities = 19/43 (44%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
Frame = +1
Query: 37 PFSSFSCWNI-IVDPSNK*WLQHSLKRWPSLLPQLQVR*LKKN 162
P S +C N+ I+D N + S W S LPQLQV LK N
Sbjct: 702 PRSLVACRNLEILDIGNN-QISDSFPCWMSKLPQLQVLVLKSN 743
>01_03_0130 +
12853325-12853948,12854657-12854822,12854907-12855118,
12855372-12855865,12856228-12856276,12856367-12856690
Length = 622
Score = 28.3 bits (60), Expect = 8.6
Identities = 14/35 (40%), Positives = 18/35 (51%), Gaps = 2/35 (5%)
Frame = +1
Query: 58 WNIIV--DPSNK*WLQHSLKRWPSLLPQLQVR*LK 156
W II DP N W H+ WP+LL Q + +K
Sbjct: 488 WRIITGSDPKNTPWSYHNGGSWPTLLWQFTLACIK 522
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,647,332
Number of Sequences: 37544
Number of extensions: 531595
Number of successful extensions: 1304
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1257
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1303
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2491484208
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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