Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P08_F_I24
         (859 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    24   1.3  
AY008296-1|AAG22858.1|  556|Tribolium castaneum Dorsal protein.        24   1.8  
AF217810-1|AAF71998.1|  431|Tribolium castaneum fork head orthol...    22   7.1  

>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 protein.
          Length = 2700

 Score = 24.2 bits (50), Expect = 1.3
 Identities = 9/18 (50%), Positives = 9/18 (50%)
 Frame = +1

Query: 529  TRPVRTCITWRPCLATWP 582
            TRP  T  T RP    WP
Sbjct: 1063 TRPTTTSTTTRPTTTNWP 1080


>AY008296-1|AAG22858.1|  556|Tribolium castaneum Dorsal protein.
          Length = 556

 Score = 23.8 bits (49), Expect = 1.8
 Identities = 9/29 (31%), Positives = 14/29 (48%)
 Frame = +1

Query: 142 TYPWTISSAYRGRKTVLTKCLNTKESLKP 228
           T+P      Y+GR  V+  C+   E  +P
Sbjct: 101 TFPSIQVMGYQGRAVVVVSCVTKDEPFRP 129


>AF217810-1|AAF71998.1|  431|Tribolium castaneum fork head
           orthologue protein.
          Length = 431

 Score = 21.8 bits (44), Expect = 7.1
 Identities = 7/13 (53%), Positives = 10/13 (76%)
 Frame = +2

Query: 725 RLPRVPSEPGLGS 763
           ++PR P +PG GS
Sbjct: 200 KVPRTPDKPGKGS 212


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 200,735
Number of Sequences: 336
Number of extensions: 4538
Number of successful extensions: 16
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 23763101
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)