Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P08_F_I24
(859 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
10_07_0147 + 13404711-13404764,13404865-13405232,13406105-134061... 35 0.096
12_02_0134 - 14071190-14071435,14071800-14071988,14072114-140721... 31 1.2
04_01_0123 - 1283197-1283292,1283330-1284439,1284790-1285177,128... 30 2.7
11_06_0481 + 24092574-24093962 29 6.3
12_01_0101 - 779047-779298,779459-779711,779857-780005,780033-78... 28 8.3
11_01_0101 - 738305-738556,738723-738977,739306-739554,739649-73... 28 8.3
>10_07_0147 +
13404711-13404764,13404865-13405232,13406105-13406153,
13406374-13406470,13406863-13407011,13407554-13407667,
13408196-13408327,13409143-13409256,13410233-13410454
Length = 432
Score = 34.7 bits (76), Expect = 0.096
Identities = 41/197 (20%), Positives = 87/197 (44%), Gaps = 3/197 (1%)
Frame = +3
Query: 261 IAKHALLMLVNISAYTRGATELLKYKPLRYKNI-IDLLISYVLNPNKTDADAACMTLSNI 437
+A+ +++L N++ G LL+ + I + + +LNP+ T +
Sbjct: 108 LARSLVMLLANLTQVDSGVAALLQVAHCSFSQIKFHRVNTDILNPDYT------LKFCCF 161
Query: 438 TRLEDELEVCLNTFIPHLNDIMNAFVNTEFNKTGSNL-HYLAPMFSNLACSHRIRKWLCE 614
++ DE L ++ ++ +F + ++ ++A + N++ R+ L E
Sbjct: 162 QKVGDEKMQGL-----YVAKLVRSFCRSSSESEEEDIFEHVASILVNISKVEAGRRILME 216
Query: 615 ENPHVPLIKLIPFCNYDVSNIRKGGAIGTIRNISFDTDYH-EFLVSPDLDLLTYILYPLM 791
P L+K I + + +RK G + TIRN F+ D + L+S + +L P+
Sbjct: 217 --PKRGLLKQIIRQSDSTNQLRKKGVVSTIRNCCFEADTQIQNLLSLAEYIWPALLLPVA 274
Query: 792 GNEDYPDDEMETLPVTL 842
G + Y +++ +P L
Sbjct: 275 GKKIYSEEDRSKMPPEL 291
>12_02_0134 - 14071190-14071435,14071800-14071988,14072114-14072194,
14072261-14072404,14072528-14072761,14072836-14073981,
14074863-14074922,14075178-14075420,14075509-14075607,
14076196-14076367,14076597-14076735,14077514-14077624,
14077695-14077797,14077885-14077962,14078054-14078122,
14078203-14078275,14078891-14078975,14079473-14079536,
14079963-14080073,14080139-14080213,14080306-14080398,
14080982-14081056,14081172-14081261
Length = 1259
Score = 31.1 bits (67), Expect = 1.2
Identities = 28/95 (29%), Positives = 40/95 (42%)
Frame = +3
Query: 333 YKPLRYKNIIDLLISYVLNPNKTDADAACMTLSNITRLEDELEVCLNTFIPHLNDIMNAF 512
Y L +I+L++ +P+K AC + N D L L IP L ++ A
Sbjct: 1085 YSSLATNKVIELVVDRCSDPDKRTRKFACFAVGNAAYHNDMLYEELRRSIPQLTKLLLA- 1143
Query: 513 VNTEFNKTGSNLHYLAPMFSNLACSHRIRKWLCEE 617
E +KT N A SNL + I LCE+
Sbjct: 1144 --PEEDKTKGN---AAGALSNLVRNSNI---LCED 1170
>04_01_0123 -
1283197-1283292,1283330-1284439,1284790-1285177,
1285523-1287609
Length = 1226
Score = 29.9 bits (64), Expect = 2.7
Identities = 20/46 (43%), Positives = 23/46 (50%), Gaps = 1/46 (2%)
Frame = +2
Query: 491 KRYHERIREHRV*-QDRFEPALPGAHV*QPGLQPQNKEVALRRESP 625
KR+ ER+RE + FE A AH QP N E RRESP
Sbjct: 232 KRWTERLRESVTNLSNAFEEAATAAHPEQPPTGDANGEDPERRESP 277
>11_06_0481 + 24092574-24093962
Length = 462
Score = 28.7 bits (61), Expect = 6.3
Identities = 14/32 (43%), Positives = 17/32 (53%)
Frame = +1
Query: 523 SLTRPVRTCITWRPCLATWPAATE*GSGSAKR 618
S+ R R C WRPC P A SG+A+R
Sbjct: 16 SIHRQYRRCNPWRPCWT--PVAAPSSSGAARR 45
>12_01_0101 - 779047-779298,779459-779711,779857-780005,780033-780281,
780377-780571,780681-780788,780935-781156,781669-781986,
781988-782615,783059-783135,783161-783267,783491-783619,
783763-783820,783902-783984,784458-784539,784617-784693,
784827-784910,784999-785068,785146-785234,785319-786008,
786485-786797
Length = 1410
Score = 28.3 bits (60), Expect = 8.3
Identities = 16/50 (32%), Positives = 25/50 (50%)
Frame = +3
Query: 420 MTLSNITRLEDELEVCLNTFIPHLNDIMNAFVNTEFNKTGSNLHYLAPMF 569
+T SN+ ED+L L P+L+ + N N F + N L+P+F
Sbjct: 1036 VTTSNLLNPEDDLSFKLEYAHPYLDGVDNRSRNRTFKISCFNSRKLSPIF 1085
>11_01_0101 - 738305-738556,738723-738977,739306-739554,739649-739843,
739953-740060,740184-740405,740806-741390,741495-741863,
742423-742529,742755-742883,743027-743084,743166-743248,
744115-744196,744274-744350,744477-744560,744649-744718,
744796-744884,744965-745654,746127-746439
Length = 1338
Score = 28.3 bits (60), Expect = 8.3
Identities = 17/50 (34%), Positives = 25/50 (50%)
Frame = +3
Query: 420 MTLSNITRLEDELEVCLNTFIPHLNDIMNAFVNTEFNKTGSNLHYLAPMF 569
+T SN+ ED+L L P+L+ I N N F + N L+P+F
Sbjct: 1013 VTSSNLLNPEDDLSFKLEYAHPYLDGIDNLSRNRTFKISCFNSRKLSPIF 1062
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,811,554
Number of Sequences: 37544
Number of extensions: 485994
Number of successful extensions: 1192
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1163
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1192
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2397465936
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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