Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P08_F_I24
(859 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AC024818-1|AAK29945.2| 375|Caenorhabditis elegans Hypothetical ... 47 2e-05
Z92811-5|CAN86600.1| 1580|Caenorhabditis elegans Hypothetical pr... 32 0.60
Z82271-8|CAN86621.1| 1580|Caenorhabditis elegans Hypothetical pr... 32 0.60
U28737-8|ABA61869.1| 537|Caenorhabditis elegans Hypothetical pr... 32 0.60
U28737-7|ABA61870.1| 501|Caenorhabditis elegans Hypothetical pr... 32 0.60
AF016669-3|AAB66097.1| 275|Caenorhabditis elegans Hypothetical ... 29 4.2
U41014-4|AAK32946.3| 557|Caenorhabditis elegans Hypothetical pr... 29 5.6
U53139-4|AAK18931.2| 369|Caenorhabditis elegans Serpentine rece... 28 7.4
L25599-9|AAN63393.1| 683|Caenorhabditis elegans Aconitase prote... 28 7.4
L25599-8|AAL65788.1| 665|Caenorhabditis elegans Aconitase prote... 28 7.4
L25599-7|AAA28050.2| 777|Caenorhabditis elegans Aconitase prote... 28 7.4
>AC024818-1|AAK29945.2| 375|Caenorhabditis elegans Hypothetical
protein Y54H5A.2 protein.
Length = 375
Score = 46.8 bits (106), Expect = 2e-05
Identities = 66/275 (24%), Positives = 124/275 (45%), Gaps = 21/275 (7%)
Frame = +3
Query: 87 SFDELIEFLKPESRIDLRHISMDYLVSLSGTEDG-VNKMLEHE--RITQAVIELTDDRIK 257
S D+L++ L P + +R +M+ + L DG K + + + +A+ +L +
Sbjct: 7 SVDDLVKLLSPTMSLIVRRKTMEVVTQLGTPLDGSAGKYFQAQDFALGKAICQLCEATSS 66
Query: 258 EIAKHALLMLVNISAYTRGATELLKYKPLRYKNIIDLLISYVLNPNKTDADAACMTLSNI 437
+ + L L N +T G+ E + L +++ + V+ N + A L N+
Sbjct: 67 DRTE-TLAALTN---FTSGSIEAADFV-LDKSKCVEIAYTAVVT-NALYSSVASRLLVNV 120
Query: 438 TR-----LEDELEVCLNTFIPHL-NDIMNAFVNTEFNK------TGSNLHYLAPMFSNLA 581
+R ++ +L+ +I L N+I + + ++ T NL L P+ N+
Sbjct: 121 SRHFPDRVDHKLKARNANYIGQLLNEIKKSVETGDEDRAKFVGFTVVNLSVLPPIRQNI- 179
Query: 582 CSHRIRKWLCEENPHVPLIKLIPF-CNY----DVSNIRKGGAIGTIRNISFDTDYHEFLV 746
++ E +P +KL+P C + + IR+ A +RN++FD H L+
Sbjct: 180 ----VQGGENESSPPSTTMKLLPIVCELLTTAETTEIRECAA-DVLRNLAFDDSLHGSLL 234
Query: 747 SPDLDLLTYILYPLMG-NEDYPDDEMETLPVTLQY 848
+ L IL PLM N++ ++E+ LPV LQY
Sbjct: 235 DTSDEYLCSILAPLMDVNDNLDEEEIAKLPVRLQY 269
>Z92811-5|CAN86600.1| 1580|Caenorhabditis elegans Hypothetical protein
T01G1.1c protein.
Length = 1580
Score = 31.9 bits (69), Expect = 0.60
Identities = 28/100 (28%), Positives = 45/100 (45%), Gaps = 4/100 (4%)
Frame = +3
Query: 375 SYVLNPNKTDADAACMTLSNITRLEDELE----VCLNTFIPHLNDIMNAFVNTEFNKTGS 542
S +LNP T + ++ S I ++D + +T H +++ VN + TGS
Sbjct: 1217 SNLLNPRGTTSSSSSKKQSRIVPVKDGMRGNVITRTHTLEGHARGVLSVDVNEKLMVTGS 1276
Query: 543 NLHYLAPMFSNLACSHRIRKWLCEENPHVPLIKLIPFCNY 662
A ++ AC IR N +V L+K +PF NY
Sbjct: 1277 K-DRTAKLWDIEAC-REIRTLGIHPN-NVHLVKFVPFSNY 1313
>Z82271-8|CAN86621.1| 1580|Caenorhabditis elegans Hypothetical protein
T01G1.1c protein.
Length = 1580
Score = 31.9 bits (69), Expect = 0.60
Identities = 28/100 (28%), Positives = 45/100 (45%), Gaps = 4/100 (4%)
Frame = +3
Query: 375 SYVLNPNKTDADAACMTLSNITRLEDELE----VCLNTFIPHLNDIMNAFVNTEFNKTGS 542
S +LNP T + ++ S I ++D + +T H +++ VN + TGS
Sbjct: 1217 SNLLNPRGTTSSSSSKKQSRIVPVKDGMRGNVITRTHTLEGHARGVLSVDVNEKLMVTGS 1276
Query: 543 NLHYLAPMFSNLACSHRIRKWLCEENPHVPLIKLIPFCNY 662
A ++ AC IR N +V L+K +PF NY
Sbjct: 1277 K-DRTAKLWDIEAC-REIRTLGIHPN-NVHLVKFVPFSNY 1313
>U28737-8|ABA61869.1| 537|Caenorhabditis elegans Hypothetical
protein F14B8.5a protein.
Length = 537
Score = 31.9 bits (69), Expect = 0.60
Identities = 21/83 (25%), Positives = 39/83 (46%)
Frame = +3
Query: 357 IIDLLISYVLNPNKTDADAACMTLSNITRLEDELEVCLNTFIPHLNDIMNAFVNTEFNKT 536
++DL + N +TL+ T L+ +L++ LN + +N+ M + NKT
Sbjct: 266 VVDLS-KFSTNTGNQGQGTQTLTLTG-TSLQTQLQMNLN--VQCINNFMGPLCDLTCNKT 321
Query: 537 GSNLHYLAPMFSNLACSHRIRKW 605
+ ++L FSN + + KW
Sbjct: 322 NAQANHLVACFSNRTGTFSLCKW 344
>U28737-7|ABA61870.1| 501|Caenorhabditis elegans Hypothetical
protein F14B8.5b protein.
Length = 501
Score = 31.9 bits (69), Expect = 0.60
Identities = 21/83 (25%), Positives = 39/83 (46%)
Frame = +3
Query: 357 IIDLLISYVLNPNKTDADAACMTLSNITRLEDELEVCLNTFIPHLNDIMNAFVNTEFNKT 536
++DL + N +TL+ T L+ +L++ LN + +N+ M + NKT
Sbjct: 230 VVDLS-KFSTNTGNQGQGTQTLTLTG-TSLQTQLQMNLN--VQCINNFMGPLCDLTCNKT 285
Query: 537 GSNLHYLAPMFSNLACSHRIRKW 605
+ ++L FSN + + KW
Sbjct: 286 NAQANHLVACFSNRTGTFSLCKW 308
>AF016669-3|AAB66097.1| 275|Caenorhabditis elegans Hypothetical
protein K10G6.2 protein.
Length = 275
Score = 29.1 bits (62), Expect = 4.2
Identities = 16/46 (34%), Positives = 24/46 (52%)
Frame = -3
Query: 800 FVAH*GIQNVCKQIQVRAH*ELVVVCVE*YITYCTDRTTLPYVGHI 663
FV H ++ C+ + + E V + E Y TYC+DR P + HI
Sbjct: 61 FVNH--YRHYCRSSNIATYNEEVRIICERYRTYCSDR-VYPSINHI 103
>U41014-4|AAK32946.3| 557|Caenorhabditis elegans Hypothetical
protein C06G1.5 protein.
Length = 557
Score = 28.7 bits (61), Expect = 5.6
Identities = 11/23 (47%), Positives = 16/23 (69%)
Frame = +3
Query: 675 IRKGGAIGTIRNISFDTDYHEFL 743
+RKGG + IRN+ FD D ++ L
Sbjct: 298 LRKGGVLQAIRNLQFDDDINKSL 320
>U53139-4|AAK18931.2| 369|Caenorhabditis elegans Serpentine
receptor, class w protein67 protein.
Length = 369
Score = 28.3 bits (60), Expect = 7.4
Identities = 18/46 (39%), Positives = 23/46 (50%), Gaps = 3/46 (6%)
Frame = -2
Query: 726 LCRMIY-YVLYRSHHPSVCWTHHSYRTVLILLTVH--GDSLRRATS 598
LC I+ Y L CW +HSY V I + V D LRRA++
Sbjct: 82 LCLFIHAYTLTLIFPDDRCWNYHSYINVFIEVWVSSLNDVLRRASA 127
>L25599-9|AAN63393.1| 683|Caenorhabditis elegans Aconitase protein
2, isoform c protein.
Length = 683
Score = 28.3 bits (60), Expect = 7.4
Identities = 21/109 (19%), Positives = 42/109 (38%)
Frame = +3
Query: 219 TQAVIELTDDRIKEIAKHALLMLVNISAYTRGATELLKYKPLRYKNIIDLLISYVLNPNK 398
T A++E + I+ + + N+ A T + Y YK + + +
Sbjct: 164 TGAIVEYFGPGVDSISATGMGTICNMGAEIGATTSVFPYNESMYKYLEATGRKEIAEEAR 223
Query: 399 TDADAACMTLSNITRLEDELEVCLNTFIPHLNDIMNAFVNTEFNKTGSN 545
D +T + + +E+ L+T PH+N + + +K G N
Sbjct: 224 KYKDL--LTADDGANYDQIIEINLDTLTPHVNGPFTPDLASSIDKLGEN 270
>L25599-8|AAL65788.1| 665|Caenorhabditis elegans Aconitase protein
2, isoform b protein.
Length = 665
Score = 28.3 bits (60), Expect = 7.4
Identities = 21/109 (19%), Positives = 42/109 (38%)
Frame = +3
Query: 219 TQAVIELTDDRIKEIAKHALLMLVNISAYTRGATELLKYKPLRYKNIIDLLISYVLNPNK 398
T A++E + I+ + + N+ A T + Y YK + + +
Sbjct: 146 TGAIVEYFGPGVDSISATGMGTICNMGAEIGATTSVFPYNESMYKYLEATGRKEIAEEAR 205
Query: 399 TDADAACMTLSNITRLEDELEVCLNTFIPHLNDIMNAFVNTEFNKTGSN 545
D +T + + +E+ L+T PH+N + + +K G N
Sbjct: 206 KYKDL--LTADDGANYDQIIEINLDTLTPHVNGPFTPDLASSIDKLGEN 252
>L25599-7|AAA28050.2| 777|Caenorhabditis elegans Aconitase protein
2, isoform a protein.
Length = 777
Score = 28.3 bits (60), Expect = 7.4
Identities = 21/109 (19%), Positives = 42/109 (38%)
Frame = +3
Query: 219 TQAVIELTDDRIKEIAKHALLMLVNISAYTRGATELLKYKPLRYKNIIDLLISYVLNPNK 398
T A++E + I+ + + N+ A T + Y YK + + +
Sbjct: 258 TGAIVEYFGPGVDSISATGMGTICNMGAEIGATTSVFPYNESMYKYLEATGRKEIAEEAR 317
Query: 399 TDADAACMTLSNITRLEDELEVCLNTFIPHLNDIMNAFVNTEFNKTGSN 545
D +T + + +E+ L+T PH+N + + +K G N
Sbjct: 318 KYKDL--LTADDGANYDQIIEINLDTLTPHVNGPFTPDLASSIDKLGEN 364
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,667,114
Number of Sequences: 27780
Number of extensions: 427659
Number of successful extensions: 1055
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1002
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1054
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2139963672
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -