Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P08_F_I21
         (620 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC57A7.07c |||homocysteine methyltransferase |Schizosaccharomy...    26   5.1  
SPAC2F7.03c |pom1||DYRK family protein kinase Pom1|Schizosacchar...    26   5.1  
SPCC1739.03 |hrr1||Helicase Required for RNAi-mediated heterochr...    26   5.1  
SPBC1711.08 |||chaperone activator Aha1 |Schizosaccharomyces pom...    25   6.7  

>SPAC57A7.07c |||homocysteine methyltransferase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 308

 Score = 25.8 bits (54), Expect = 5.1
 Identities = 12/34 (35%), Positives = 16/34 (47%)
 Frame = +1

Query: 364 DEVVRSVKEWSNSIIKLASLHNRKIFLLKCRTNN 465
           D    S +EWS    K ++LHN  + L  C   N
Sbjct: 263 DHPAPSPEEWSTITAKYSNLHNGNLILGGCCETN 296


>SPAC2F7.03c |pom1||DYRK family protein kinase
           Pom1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1087

 Score = 25.8 bits (54), Expect = 5.1
 Identities = 10/17 (58%), Positives = 13/17 (76%)
 Frame = -3

Query: 300 VHNYYKIFFVYLRNVDK 250
           ++NY  I+F  LRNVDK
Sbjct: 650 INNYDNIYFTGLRNVDK 666


>SPCC1739.03 |hrr1||Helicase Required for RNAi-mediated
           heterochromatin assembly Hrr1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1015

 Score = 25.8 bits (54), Expect = 5.1
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = +1

Query: 415 ASLHNRKIFLLKCRTNNIIPKHISNN 492
           AS    K +L+ C++N    KHI NN
Sbjct: 317 ASTFPMKDYLVHCKSNQETAKHIQNN 342


>SPBC1711.08 |||chaperone activator Aha1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 336

 Score = 25.4 bits (53), Expect = 6.7
 Identities = 11/33 (33%), Positives = 19/33 (57%)
 Frame = +1

Query: 331 GFFQVMRIAHGDEVVRSVKEWSNSIIKLASLHN 429
           GF QV+   HGD+V  S +E + +  +   +H+
Sbjct: 137 GFSQVLLQTHGDDVYLSTEEHNGNAARGLPVHS 169


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,280,355
Number of Sequences: 5004
Number of extensions: 41971
Number of successful extensions: 85
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 85
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 85
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 273658928
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)