Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P08_F_I21
         (620 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY484405-1|AAR86939.1|  857|Drosophila melanogaster reverse tran...    40   0.004
AY484404-1|AAR86938.1|  857|Drosophila melanogaster reverse tran...    40   0.004
AF418572-1|AAL14648.1|  211|Drosophila melanogaster Orf1 protein.      40   0.004

>AY484405-1|AAR86939.1|  857|Drosophila melanogaster reverse
           transcriptase protein.
          Length = 857

 Score = 39.5 bits (88), Expect = 0.004
 Identities = 25/77 (32%), Positives = 42/77 (54%), Gaps = 3/77 (3%)
 Frame = +1

Query: 376 RSVKEWSNSIIKLASLHNRKIFLLKCRTNNIIPKHISNNMK--CILSLNIEDHP-FKKMS 546
           R++ ++  +++KL  L +   FLLKCR +N+IP  I N  +   IL+ + + HP   +  
Sbjct: 37  RTINKFQLTLVKLTKLKSSLKFLLKCRKSNLIPNFIKNLTQHLTILTTDNKTHPDITRTL 96

Query: 547 DRLITGFQGSILSLEIK 597
            R    +   IL+L IK
Sbjct: 97  TRHTHFYHTKILNLLIK 113


>AY484404-1|AAR86938.1|  857|Drosophila melanogaster reverse
           transcriptase protein.
          Length = 857

 Score = 39.5 bits (88), Expect = 0.004
 Identities = 25/77 (32%), Positives = 42/77 (54%), Gaps = 3/77 (3%)
 Frame = +1

Query: 376 RSVKEWSNSIIKLASLHNRKIFLLKCRTNNIIPKHISNNMK--CILSLNIEDHP-FKKMS 546
           R++ ++  +++KL  L +   FLLKCR +N+IP  I N  +   IL+ + + HP   +  
Sbjct: 37  RTINKFQLTLVKLTKLKSSLKFLLKCRKSNLIPNFIKNLTQHLTILTTDNKTHPDITRTL 96

Query: 547 DRLITGFQGSILSLEIK 597
            R    +   IL+L IK
Sbjct: 97  TRHTHFYHTKILNLLIK 113


>AF418572-1|AAL14648.1|  211|Drosophila melanogaster Orf1 protein.
          Length = 211

 Score = 39.5 bits (88), Expect = 0.004
 Identities = 25/77 (32%), Positives = 42/77 (54%), Gaps = 3/77 (3%)
 Frame = +1

Query: 376 RSVKEWSNSIIKLASLHNRKIFLLKCRTNNIIPKHISNNMK--CILSLNIEDHP-FKKMS 546
           R++ ++  +++KL  L +   FLLKCR +N+IP  I N  +   IL+ + + HP   +  
Sbjct: 37  RTINKFQLTLVKLTKLKSSLKFLLKCRKSNLIPNFIKNLTQHLTILTTDNKTHPDITRTL 96

Query: 547 DRLITGFQGSILSLEIK 597
            R    +   IL+L IK
Sbjct: 97  TRHTHFYHTKILNLLIK 113


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,749,592
Number of Sequences: 53049
Number of extensions: 400230
Number of successful extensions: 996
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 964
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 996
length of database: 24,988,368
effective HSP length: 82
effective length of database: 20,638,350
effective search space used: 2559155400
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)