Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P08_F_I21
         (620 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC006656-3|AAF39882.1|  549|Caenorhabditis elegans Hypothetical ...    31   0.88 
Z81134-1|CAB03447.1|  444|Caenorhabditis elegans Hypothetical pr...    29   2.7  
L14433-1|AAA27979.1|  398|Caenorhabditis elegans Hypothetical pr...    29   3.5  
Z14092-11|CAI46627.1|  817|Caenorhabditis elegans Hypothetical p...    28   6.2  
Z14092-5|CAD45600.1|  816|Caenorhabditis elegans Hypothetical pr...    28   6.2  
Z14092-4|CAD45599.1|  820|Caenorhabditis elegans Hypothetical pr...    28   6.2  
Z14092-3|CAA78473.3|  754|Caenorhabditis elegans Hypothetical pr...    28   6.2  
AF003145-6|AAK68678.1| 1420|Caenorhabditis elegans Mtk1/mekk4 ho...    27   8.2  
AF003145-5|AAB57718.1| 1418|Caenorhabditis elegans Mtk1/mekk4 ho...    27   8.2  

>AC006656-3|AAF39882.1|  549|Caenorhabditis elegans Hypothetical
           protein H12I13.3 protein.
          Length = 549

 Score = 30.7 bits (66), Expect = 0.88
 Identities = 19/53 (35%), Positives = 25/53 (47%)
 Frame = +1

Query: 397 NSIIKLASLHNRKIFLLKCRTNNIIPKHISNNMKCILSLNIEDHPFKKMSDRL 555
           N I K+  L+N  I +    TN+IIP HIS     +    I D    K  DR+
Sbjct: 187 NDIPKVEKLNNLAINVFSNDTNSIIPVHISKKSTSVSENRIIDLFLIKNEDRM 239


>Z81134-1|CAB03447.1|  444|Caenorhabditis elegans Hypothetical
           protein T28D6.2 protein.
          Length = 444

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 13/47 (27%), Positives = 25/47 (53%)
 Frame = +1

Query: 364 DEVVRSVKEWSNSIIKLASLHNRKIFLLKCRTNNIIPKHISNNMKCI 504
           DE+ +S  E SN ++K    H + + +      +++PK +S  +K I
Sbjct: 284 DEITKSCFEASNQMVKCDPKHGKYMAVCLLYRGDVVPKDVSAAIKSI 330


>L14433-1|AAA27979.1|  398|Caenorhabditis elegans Hypothetical
           protein C50C3.7 protein.
          Length = 398

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 19/81 (23%), Positives = 39/81 (48%), Gaps = 2/81 (2%)
 Frame = +1

Query: 343 VMRIAHGDEVVRSVKEWSNSIIKLASLHNRKIFLLKC--RTNNIIPKHISNNMKCILSLN 516
           +  +AH + +  +V  W+ +I    + + R + L K    TN ++   I    + I  + 
Sbjct: 41  LQEVAHSETIGGAVLTWATTIASWMNTNGRMVLLAKTFQATNQVL---IFGRKQLIGQIK 97

Query: 517 IEDHPFKKMSDRLITGFQGSI 579
             D+ F++ +   +TG +GSI
Sbjct: 98  RIDYRFQRNTMGGLTGHKGSI 118


>Z14092-11|CAI46627.1|  817|Caenorhabditis elegans Hypothetical
           protein R107.4d protein.
          Length = 817

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 12/32 (37%), Positives = 21/32 (65%)
 Frame = +1

Query: 466 IIPKHISNNMKCILSLNIEDHPFKKMSDRLIT 561
           ++P+    +M+ IL+ NIE H F  M+DR ++
Sbjct: 414 VVPQTSHVDMRKILARNIEFHEFDDMTDRKLS 445


>Z14092-5|CAD45600.1|  816|Caenorhabditis elegans Hypothetical
           protein R107.4c protein.
          Length = 816

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 12/32 (37%), Positives = 21/32 (65%)
 Frame = +1

Query: 466 IIPKHISNNMKCILSLNIEDHPFKKMSDRLIT 561
           ++P+    +M+ IL+ NIE H F  M+DR ++
Sbjct: 414 VVPQTSHVDMRKILARNIEFHEFDDMTDRKLS 445


>Z14092-4|CAD45599.1|  820|Caenorhabditis elegans Hypothetical
           protein R107.4b protein.
          Length = 820

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 12/32 (37%), Positives = 21/32 (65%)
 Frame = +1

Query: 466 IIPKHISNNMKCILSLNIEDHPFKKMSDRLIT 561
           ++P+    +M+ IL+ NIE H F  M+DR ++
Sbjct: 414 VVPQTSHVDMRKILARNIEFHEFDDMTDRKLS 445


>Z14092-3|CAA78473.3|  754|Caenorhabditis elegans Hypothetical
           protein R107.4a protein.
          Length = 754

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 12/32 (37%), Positives = 21/32 (65%)
 Frame = +1

Query: 466 IIPKHISNNMKCILSLNIEDHPFKKMSDRLIT 561
           ++P+    +M+ IL+ NIE H F  M+DR ++
Sbjct: 414 VVPQTSHVDMRKILARNIEFHEFDDMTDRKLS 445


>AF003145-6|AAK68678.1| 1420|Caenorhabditis elegans Mtk1/mekk4 homolog
            protein 1, isoformb protein.
          Length = 1420

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 13/41 (31%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
 Frame = +1

Query: 349  RIAHGDEVVRSVKEWSNSIIKLAS-LHNRKIFLLKCRTNNI 468
            RI HG   ++ V++++NS+++    LH+ KI     +  NI
Sbjct: 1208 RICHGKMDLKMVRQYTNSLLRAVQYLHSHKIIHRDIKPANI 1248


>AF003145-5|AAB57718.1| 1418|Caenorhabditis elegans Mtk1/mekk4 homolog
            protein 1, isoforma protein.
          Length = 1418

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 13/41 (31%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
 Frame = +1

Query: 349  RIAHGDEVVRSVKEWSNSIIKLAS-LHNRKIFLLKCRTNNI 468
            RI HG   ++ V++++NS+++    LH+ KI     +  NI
Sbjct: 1208 RICHGKMDLKMVRQYTNSLLRAVQYLHSHKIIHRDIKPANI 1248


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,246,159
Number of Sequences: 27780
Number of extensions: 224151
Number of successful extensions: 417
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 414
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 417
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1353389824
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)