Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P08_F_I18
         (746 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                25   0.015
AY273778-1|AAP33487.1|  427|Apis mellifera ultraspiracle protein...    24   1.3  
AF263459-1|AAF73057.1|  427|Apis mellifera ultraspiracle protein...    24   1.3  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             24   1.3  
DQ325087-1|ABD14101.1|  179|Apis mellifera complementary sex det...    22   7.0  
DQ325086-1|ABD14100.1|  179|Apis mellifera complementary sex det...    22   7.0  
DQ325085-1|ABD14099.1|  179|Apis mellifera complementary sex det...    22   7.0  
DQ325084-1|ABD14098.1|  179|Apis mellifera complementary sex det...    22   7.0  
AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    22   7.0  

>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 24.6 bits (51), Expect(2) = 0.015
 Identities = 9/21 (42%), Positives = 9/21 (42%)
 Frame = +3

Query: 336 HQIRGLEETQVVMEPQHHHHH 398
           H   G       M P HHHHH
Sbjct: 335 HHQHGNHTMGPTMGPPHHHHH 355



 Score = 24.6 bits (51), Expect(2) = 0.015
 Identities = 7/12 (58%), Positives = 9/12 (75%)
 Frame = +3

Query: 378 PQHHHHHGKQNV 413
           P HHHHH  Q++
Sbjct: 350 PHHHHHHQTQSL 361


>AY273778-1|AAP33487.1|  427|Apis mellifera ultraspiracle protein
           protein.
          Length = 427

 Score = 24.2 bits (50), Expect = 1.3
 Identities = 8/26 (30%), Positives = 18/26 (69%)
 Frame = +2

Query: 476 QHTIRKEMQILFEEEKASLIEQHKRD 553
           + T+RK++     EEK+ +I++ +R+
Sbjct: 135 KRTVRKDLSYACREEKSCIIDKRQRN 160


>AF263459-1|AAF73057.1|  427|Apis mellifera ultraspiracle protein
           protein.
          Length = 427

 Score = 24.2 bits (50), Expect = 1.3
 Identities = 8/26 (30%), Positives = 18/26 (69%)
 Frame = +2

Query: 476 QHTIRKEMQILFEEEKASLIEQHKRD 553
           + T+RK++     EEK+ +I++ +R+
Sbjct: 135 KRTVRKDLSYACREEKSCIIDKRQRN 160


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 24.2 bits (50), Expect = 1.3
 Identities = 12/39 (30%), Positives = 19/39 (48%), Gaps = 1/39 (2%)
 Frame = +2

Query: 299  KRKSSIGSVD-DVTPDKRLRRDSSGNGTTAPPSPWETKR 412
            +R   + +VD   +P  R R D   +  T+PP+P    R
Sbjct: 1367 ERPERVPTVDLSPSPSDRGRNDDGSDRLTSPPTPLSISR 1405


>DQ325087-1|ABD14101.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 21.8 bits (44), Expect = 7.0
 Identities = 8/22 (36%), Positives = 13/22 (59%)
 Frame = +2

Query: 92  NQEYKLNASQYKKMAKESDMSL 157
           N+EY+    QY+K+  E +  L
Sbjct: 9   NREYRKKDRQYEKLCNEEEKLL 30


>DQ325086-1|ABD14100.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 21.8 bits (44), Expect = 7.0
 Identities = 8/22 (36%), Positives = 13/22 (59%)
 Frame = +2

Query: 92  NQEYKLNASQYKKMAKESDMSL 157
           N+EY+    QY+K+  E +  L
Sbjct: 9   NREYRKKDRQYEKLCNEEEKLL 30


>DQ325085-1|ABD14099.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 21.8 bits (44), Expect = 7.0
 Identities = 8/22 (36%), Positives = 13/22 (59%)
 Frame = +2

Query: 92  NQEYKLNASQYKKMAKESDMSL 157
           N+EY+    QY+K+  E +  L
Sbjct: 9   NREYRKKDRQYEKLCNEEEKLL 30


>DQ325084-1|ABD14098.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 21.8 bits (44), Expect = 7.0
 Identities = 8/22 (36%), Positives = 13/22 (59%)
 Frame = +2

Query: 92  NQEYKLNASQYKKMAKESDMSL 157
           N+EY+    QY+K+  E +  L
Sbjct: 9   NREYRKKDRQYEKLCNEEEKLL 30


>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 21.8 bits (44), Expect = 7.0
 Identities = 7/21 (33%), Positives = 9/21 (42%)
 Frame = +3

Query: 336 HQIRGLEETQVVMEPQHHHHH 398
           H   G   + +   P HHH H
Sbjct: 416 HHTMGHGHSHIHATPHHHHSH 436


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 172,302
Number of Sequences: 438
Number of extensions: 3506
Number of successful extensions: 39
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 38
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 39
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23388480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)