Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P08_F_I17
         (770 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC821.09 |eng1||endo-1,3-beta-glucanase Eng1|Schizosaccharomyc...    27   3.9  
SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31 |Schizo...    27   3.9  
SPBC1105.14 |rsv2||transcription factor Rsv2|Schizosaccharomyces...    27   3.9  
SPCC736.14 |dis1||microtubule-associated protein Dis1 |Schizosac...    26   5.2  
SPCC757.05c |||acetylornithine deacetylase |Schizosaccharomyces ...    25   9.1  
SPCC757.12 |||alpha-amylase homolog |Schizosaccharomyces pombe|c...    25   9.1  

>SPAC821.09 |eng1||endo-1,3-beta-glucanase Eng1|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1016

 Score = 26.6 bits (56), Expect = 3.9
 Identities = 12/31 (38%), Positives = 16/31 (51%)
 Frame = +1

Query: 418  VSSPKAASPTRVTMVRTTVSLTPPTRTDTSP 510
            V S  + SP  VT  + T + TP   T T+P
Sbjct: 921  VCSDGSLSPNTVTTTKATTTFTPTPTTTTTP 951


>SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31
            |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1224

 Score = 26.6 bits (56), Expect = 3.9
 Identities = 27/78 (34%), Positives = 34/78 (43%), Gaps = 2/78 (2%)
 Frame = +1

Query: 373  PPTEFVLMRRE*PLTVS--SPKAASPTRVTMVRTTVSLTPPTRTDTSPRARIFPLLPQSP 546
            PPT         P TVS  SP A SP+       T  L PP  +   P +   P +PQ P
Sbjct: 1023 PPTASQRASAYEPPTVSVPSPSALSPS------VTPQL-PPVSSRLPPVSATRPQIPQPP 1075

Query: 547  RKS*NLWSRTPVMRPLVS 600
              S  L S + V RP ++
Sbjct: 1076 PVSTALPSSSAVSRPPIA 1093


>SPBC1105.14 |rsv2||transcription factor Rsv2|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 637

 Score = 26.6 bits (56), Expect = 3.9
 Identities = 18/52 (34%), Positives = 26/52 (50%), Gaps = 3/52 (5%)
 Frame = +1

Query: 415 TVSSPKAASPTRVTMV---RTTVSLTPPTRTDTSPRARIFPLLPQSPRKS*N 561
           T  +P + SP++  +V    TT+S +PP  +     A I  LLP S   S N
Sbjct: 439 TSVNPHSLSPSQPPVVVPSNTTISSSPPLTSPVKTSANIPNLLPTSELDSSN 490


>SPCC736.14 |dis1||microtubule-associated protein Dis1
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 882

 Score = 26.2 bits (55), Expect = 5.2
 Identities = 19/54 (35%), Positives = 26/54 (48%)
 Frame = +1

Query: 337 KLPLKASPTTSKPPTEFVLMRRE*PLTVSSPKAASPTRVTMVRTTVSLTPPTRT 498
           +LP  ASP  + P    V  +   PL  S+P  AS T  ++  T  S T P+ T
Sbjct: 545 RLPRVASPLKTSPVKLAVTPQAPSPLPSSNPSQASLTEESL-STRSSPTKPSTT 597


>SPCC757.05c |||acetylornithine deacetylase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 400

 Score = 25.4 bits (53), Expect = 9.1
 Identities = 12/40 (30%), Positives = 18/40 (45%)
 Frame = +3

Query: 333 NEVTAEGFSYDFETSNGIRADAQGVATNGVQSQGSFAYKG 452
           NEV    F   +  S G+  + Q V++N       +AY G
Sbjct: 77  NEVNVSDFLKSYLESKGLTVELQRVSSNPTVRDNVYAYLG 116


>SPCC757.12 |||alpha-amylase homolog |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 625

 Score = 25.4 bits (53), Expect = 9.1
 Identities = 11/31 (35%), Positives = 21/31 (67%)
 Frame = -1

Query: 230 ASLSQTSVASKATASRSQAETRAKTGSSIAS 138
           ASLS    +S  ++S+S + + +++GSS +S
Sbjct: 517 ASLSSVHTSSATSSSKSSSSSSSRSGSSSSS 547


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,294,745
Number of Sequences: 5004
Number of extensions: 41052
Number of successful extensions: 128
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 123
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 128
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 371330890
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)