Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P08_F_I17
(770 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_03_0904 + 20717005-20718087 31 0.77
09_02_0121 + 4502628-4502696,4503727-4503829,4504205-4504328,450... 30 2.4
12_01_0850 + 7985289-7985789,7986636-7986888,7987173-7987231 29 4.1
05_03_0397 + 13488642-13488941,13489711-13489963,13490594-134906... 29 4.1
04_04_1292 - 32413046-32413807,32413901-32413936,32414037-324141... 29 4.1
04_04_1150 + 31278367-31278885,31280065-31281278,31281759-31283355 29 4.1
03_06_0186 - 32197461-32197751,32204940-32205548,32205603-32207009 29 4.1
02_04_0035 + 19078267-19078479,19078588-19078674,19079792-190798... 29 5.4
01_06_1391 + 36992276-36992476,36992609-36992794,36993215-369933... 29 5.4
11_06_0326 - 22382001-22383248 28 7.2
08_02_1168 + 24853895-24854216,24854264-24854286,24856102-248561... 28 7.2
01_06_0802 + 32087661-32087965,32088106-32088220,32088302-320884... 28 7.2
08_02_1365 - 26423915-26423953,26424409-26424492,26424543-264245... 28 9.5
>04_03_0904 + 20717005-20718087
Length = 360
Score = 31.5 bits (68), Expect = 0.77
Identities = 22/66 (33%), Positives = 27/66 (40%)
Frame = +1
Query: 343 PLKASPTTSKPPTEFVLMRRE*PLTVSSPKAASPTRVTMVRTTVSLTPPTRTDTSPRARI 522
P+K +P KPP E P PK P T + T TPPT T T P+
Sbjct: 37 PVKPAPKPEKPPKEHKPPHHHEPKPEKPPKEHKPPAYTPPKPTP--TPPTYTPT-PKPTP 93
Query: 523 FPLLPQ 540
P P+
Sbjct: 94 PPYTPK 99
>09_02_0121 +
4502628-4502696,4503727-4503829,4504205-4504328,
4505963-4506306,4506383-4506487,4507907-4508288,
4509173-4509437,4509936-4510094,4511150-4511201,
4511266-4511462,4512865-4513350,4513797-4514093
Length = 860
Score = 29.9 bits (64), Expect = 2.4
Identities = 19/64 (29%), Positives = 29/64 (45%)
Frame = +3
Query: 330 NNEVTAEGFSYDFETSNGIRADAQGVATNGVQSQGSFAYKGDDGQDYSITYTADENGYQP 509
NN + A G S + + +G + V G QS+GS + G+D S ++ G
Sbjct: 731 NNTMVASGTSVESDDISGSQFKETNVYIAGQQSEGSGVWIPAPGRDISGLQPSNYYGLPL 790
Query: 510 QGAH 521
QG H
Sbjct: 791 QGQH 794
>12_01_0850 + 7985289-7985789,7986636-7986888,7987173-7987231
Length = 270
Score = 29.1 bits (62), Expect = 4.1
Identities = 12/25 (48%), Positives = 16/25 (64%)
Frame = +3
Query: 306 AGAQILRLNNEVTAEGFSYDFETSN 380
AG ++LR+ NE TA +Y FE N
Sbjct: 210 AGLEVLRIINEPTAASLAYGFEKKN 234
>05_03_0397 +
13488642-13488941,13489711-13489963,13490594-13490673,
13491251-13491393,13491512-13491610,13491785-13491974,
13492504-13492902,13492993-13493400
Length = 623
Score = 29.1 bits (62), Expect = 4.1
Identities = 12/25 (48%), Positives = 16/25 (64%)
Frame = +3
Query: 306 AGAQILRLNNEVTAEGFSYDFETSN 380
AG ++LR+ NE TA +Y FE N
Sbjct: 143 AGLEVLRIINEPTAASLAYGFEKKN 167
>04_04_1292 -
32413046-32413807,32413901-32413936,32414037-32414179,
32414263-32414419,32414518-32414679,32414860-32415107,
32415589-32415733
Length = 550
Score = 29.1 bits (62), Expect = 4.1
Identities = 13/45 (28%), Positives = 23/45 (51%)
Frame = +1
Query: 295 PQLTLVLRSSD*TMKLPLKASPTTSKPPTEFVLMRRE*PLTVSSP 429
PQ+ + R S T + P+ P T PP +++++ P+ V P
Sbjct: 476 PQMMNIARPSPSTPQPPMGIMPQTQPPPPAPTMLQQQMPMNVGPP 520
>04_04_1150 + 31278367-31278885,31280065-31281278,31281759-31283355
Length = 1109
Score = 29.1 bits (62), Expect = 4.1
Identities = 20/66 (30%), Positives = 28/66 (42%), Gaps = 2/66 (3%)
Frame = -3
Query: 612 YHHQRYQRPHHGRSAPKISRFPRGL--GEEWEDARPGAGIRSRRRCK*YCSPDHRHPCRR 439
+HHQR QR P++ R P + GE+ ++ P I S + K P P R
Sbjct: 151 HHHQRQQRRGSRTRDPRVRRGPLRIPYGEDEKEEPPATPIASSNKNKREEPPTKHRPMAR 210
Query: 438 SCLGTG 421
G G
Sbjct: 211 PPGGGG 216
>03_06_0186 - 32197461-32197751,32204940-32205548,32205603-32207009
Length = 768
Score = 29.1 bits (62), Expect = 4.1
Identities = 15/39 (38%), Positives = 21/39 (53%)
Frame = -2
Query: 442 AKLPWDWTPLVATPCASARIPLEVSKS*EKPSAVTSLFS 326
A LP + TP+ ATP SA P + + P A+ LF+
Sbjct: 613 ALLPQEMTPMPATPPPSALEPGSLPERASSPCAIAGLFT 651
>02_04_0035 +
19078267-19078479,19078588-19078674,19079792-19079863,
19080338-19080526,19080599-19080718,19081348-19081430,
19081518-19081773,19081878-19082199,19086355-19086548,
19087135-19087227,19089327-19089497,19089580-19089699,
19090303-19090373,19090608-19090675,19091097-19091191
Length = 717
Score = 28.7 bits (61), Expect = 5.4
Identities = 19/55 (34%), Positives = 26/55 (47%), Gaps = 1/55 (1%)
Frame = -1
Query: 230 ASLSQTSVASKATA-SRSQAETRAKTGSSIASGRQVFVVKAVC*ADTKHSGYHEQ 69
AS + + K TA SR Q E G S A GR V V+ + + SGY ++
Sbjct: 472 ASFAASMSDGKVTAASRGQGEASVGRGGSTAGGRGVGTVEEARRKEKRKSGYPKE 526
>01_06_1391 +
36992276-36992476,36992609-36992794,36993215-36993327,
36993504-36993687,36993799-36993900
Length = 261
Score = 28.7 bits (61), Expect = 5.4
Identities = 10/18 (55%), Positives = 14/18 (77%)
Frame = -1
Query: 590 GLITGVLLQRFQDFLGDW 537
G+++GVLLQ F F+G W
Sbjct: 83 GMLSGVLLQLFYGFMGSW 100
>11_06_0326 - 22382001-22383248
Length = 415
Score = 28.3 bits (60), Expect = 7.2
Identities = 12/29 (41%), Positives = 17/29 (58%)
Frame = -2
Query: 595 PAASSRAFCSKDFKISSGIGGGVGRCAPW 509
PAA++ A KI++GI GG G P+
Sbjct: 369 PAAAAAAVVPSPVKIAAGISGGAGLLGPY 397
>08_02_1168 +
24853895-24854216,24854264-24854286,24856102-24856181,
24856286-24856369,24856843-24857074
Length = 246
Score = 28.3 bits (60), Expect = 7.2
Identities = 16/42 (38%), Positives = 19/42 (45%)
Frame = +2
Query: 455 RWSGLQYHLHRRRERIPAPGRASSHSSPNPRGNLEIFGAERP 580
R G Q RR R P PG ASS ++ P +L G P
Sbjct: 40 RGEGRQRRCGRREARRPPPGAASSAAAGRPDPSLAAVGRPDP 81
>01_06_0802 +
32087661-32087965,32088106-32088220,32088302-32088421,
32089678-32089788,32090084-32090122,32090965-32091069,
32091149-32091187,32091923-32092015
Length = 308
Score = 28.3 bits (60), Expect = 7.2
Identities = 13/22 (59%), Positives = 17/22 (77%)
Frame = +1
Query: 421 SSPKAASPTRVTMVRTTVSLTP 486
SSP AASP+R+ + R+T SL P
Sbjct: 42 SSPAAASPSRLPLWRSTGSLLP 63
>08_02_1365 -
26423915-26423953,26424409-26424492,26424543-26424577,
26425469-26425697
Length = 128
Score = 27.9 bits (59), Expect = 9.5
Identities = 16/38 (42%), Positives = 21/38 (55%), Gaps = 2/38 (5%)
Frame = +2
Query: 416 RCPVPRQLRLQG*RW--SGLQYHLHRRRERIPAPGRAS 523
RCP PR LQ RW GL++ L R R+ + G A+
Sbjct: 27 RCPDPRMHHLQIWRWLGFGLEWWLAAGRTRVRSGGAAA 64
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,713,300
Number of Sequences: 37544
Number of extensions: 356781
Number of successful extensions: 1345
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1288
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1343
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2075009728
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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