Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P08_F_I17
         (770 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF531707-1|ABP57431.1|  138|Apis mellifera structural cuticle pr...    61   1e-11
AY703685-1|AAU12681.1|  200|Apis mellifera abdominal-A protein.        23   4.2  
AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    23   4.2  
AF388659-1|AAK71995.1|  782|Apis mellifera 1D-myo-inositol-trisp...    23   4.2  
AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    22   7.3  

>EF531707-1|ABP57431.1|  138|Apis mellifera structural cuticle
           protein protein.
          Length = 138

 Score = 60.9 bits (141), Expect = 1e-11
 Identities = 40/98 (40%), Positives = 48/98 (48%), Gaps = 6/98 (6%)
 Frame = +3

Query: 303 DAGAQILRLNNEVTAEG-FSYDFETSNGIRADAQGVATN-----GVQSQGSFAYKGDDGQ 464
           D  A I     EV  +G +  +FETSNGI     G          V SQGS +Y   DGQ
Sbjct: 24  DKDAVITSQQLEVNFDGNYINNFETSNGISHQESGQPKQVDNETPVVSQGSDSYTAPDGQ 83

Query: 465 DYSITYTADENGYQPQGAHXXXXXXXXXXXXKSLEQNA 578
             SITY ADENG+Q QG+H            ++LE NA
Sbjct: 84  QVSITYVADENGFQVQGSHIPTAPPIPPEIQRALEWNA 121


>AY703685-1|AAU12681.1|  200|Apis mellifera abdominal-A protein.
          Length = 200

 Score = 22.6 bits (46), Expect = 4.2
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = -1

Query: 233 EASLSQTSVASKATASRSQAETRAKTGSS 147
           E+SLS  +VA+ A     Q  + + TGSS
Sbjct: 40  ESSLSAAAVAAAAVNYAQQHNSPSPTGSS 68


>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 22.6 bits (46), Expect = 4.2
 Identities = 7/16 (43%), Positives = 8/16 (50%)
 Frame = -3

Query: 612 YHHQRYQRPHHGRSAP 565
           +HH     PHH  S P
Sbjct: 432 HHHSHAATPHHQHSTP 447


>AF388659-1|AAK71995.1|  782|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform A protein.
          Length = 782

 Score = 22.6 bits (46), Expect = 4.2
 Identities = 16/44 (36%), Positives = 20/44 (45%)
 Frame = -3

Query: 618 GMYHHQRYQRPHHGRSAPKISRFPRGLGEEWEDARPGAGIRSRR 487
           G+Y+HQR  R     SA  +SR    +       R G  I SRR
Sbjct: 14  GLYYHQRCSRDWFRISAGCVSRISNRISRNRVLLR-GQCISSRR 56


>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 21.8 bits (44), Expect = 7.3
 Identities = 8/19 (42%), Positives = 10/19 (52%)
 Frame = -3

Query: 612 YHHQRYQRPHHGRSAPKIS 556
           YHH      HH  SAP ++
Sbjct: 510 YHHVAPPSGHHASSAPLLA 528


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 161,407
Number of Sequences: 438
Number of extensions: 3232
Number of successful extensions: 12
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24154023
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)