Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P08_F_I15
         (494 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC020641-1|AAH20641.1|  259|Homo sapiens ribosomal RNA processin...    34   0.31 
AF151873-1|AAD34110.1|  259|Homo sapiens CGI-115 protein protein.      34   0.31 
BC003668-1|AAH03668.1|  128|Homo sapiens Unknown (protein for IM...    33   0.72 

>BC020641-1|AAH20641.1|  259|Homo sapiens ribosomal RNA processing
           15 homolog (S. cerevisiae) protein.
          Length = 259

 Score = 33.9 bits (74), Expect = 0.31
 Identities = 12/33 (36%), Positives = 21/33 (63%)
 Frame = +3

Query: 312 NEGWADSISKILGSSKPKNKKTLVLSRAKKHSE 410
           N GWAD+++K+L    P++K T+++   K   E
Sbjct: 66  NMGWADAMAKVLNKKTPESKPTILVKNKKLEKE 98


>AF151873-1|AAD34110.1|  259|Homo sapiens CGI-115 protein protein.
          Length = 259

 Score = 33.9 bits (74), Expect = 0.31
 Identities = 12/33 (36%), Positives = 21/33 (63%)
 Frame = +3

Query: 312 NEGWADSISKILGSSKPKNKKTLVLSRAKKHSE 410
           N GWAD+++K+L    P++K T+++   K   E
Sbjct: 66  NMGWADAMAKVLNKKTPESKPTILVKNKKLEKE 98


>BC003668-1|AAH03668.1|  128|Homo sapiens Unknown (protein for
           IMAGE:3950114) protein.
          Length = 128

 Score = 32.7 bits (71), Expect = 0.72
 Identities = 11/29 (37%), Positives = 20/29 (68%)
 Frame = +3

Query: 312 NEGWADSISKILGSSKPKNKKTLVLSRAK 398
           N GWAD+++K+L    P++K T+++   K
Sbjct: 89  NMGWADAMAKVLNKKTPESKPTILVKNKK 117


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 44,918,497
Number of Sequences: 237096
Number of extensions: 554046
Number of successful extensions: 713
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 703
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 713
length of database: 76,859,062
effective HSP length: 85
effective length of database: 56,705,902
effective search space used: 4479766258
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)