Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P08_F_I14
(791 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_01_0250 - 1852619-1854124,1855224-1856153,1856293-1856409,185... 31 0.79
04_03_0602 - 17884667-17885817,17885946-17886113,17886413-17887313 31 1.0
09_04_0479 - 17948043-17949037,17949554-17949715,17949809-179502... 30 1.8
04_03_0616 - 18052596-18053779,18053935-18054099,18056236-180562... 30 1.8
03_01_0427 + 3296717-3296861,3296966-3297210 30 2.4
11_01_0251 - 1926810-1928273 29 3.2
12_02_0581 - 20785198-20785962,20786107-20786649 28 7.4
12_01_0906 + 8799284-8799441,8800865-8801690,8801933-8802055,880... 28 7.4
02_04_0179 + 20682852-20684510,20684593-20684661,20684741-206848... 28 7.4
11_01_0319 - 2396835-2396951,2397035-2397105,2397219-2397297,239... 28 9.8
>12_01_0250 - 1852619-1854124,1855224-1856153,1856293-1856409,
1856777-1857157
Length = 977
Score = 31.5 bits (68), Expect = 0.79
Identities = 21/68 (30%), Positives = 30/68 (44%), Gaps = 1/68 (1%)
Frame = -1
Query: 395 ECKAYESICLNFSLLVHSNKNVLSYKCTQFYNRNHNCTSYRIF-CTHSEPDWAHTPKRPI 219
E ES+ L++S + + K + S Y H+ + F C H P +A T RP
Sbjct: 909 EAAGMESVGLSYSGAMEARKLLQSCGWVGPYEVRHDAGGHGFFFCWHKRPLYAVTAWRPA 968
Query: 218 ESRRQQLR 195
SRR R
Sbjct: 969 ASRRGHTR 976
>04_03_0602 - 17884667-17885817,17885946-17886113,17886413-17887313
Length = 739
Score = 31.1 bits (67), Expect = 1.0
Identities = 16/52 (30%), Positives = 23/52 (44%)
Frame = +2
Query: 311 EYIYRTRRSCLNALRERSSNICSRTPCIRGICTQTIQDPGFTCKCEGTGYYG 466
++ R+ SC A ++ S C T C + PG+TC C GY G
Sbjct: 242 DWAIRSANSCEEAWKKMDSYACKST---NSECFNSTNGPGYTCNC-SKGYEG 289
>09_04_0479 -
17948043-17949037,17949554-17949715,17949809-17950262,
17952895-17953326
Length = 680
Score = 30.3 bits (65), Expect = 1.8
Identities = 24/78 (30%), Positives = 36/78 (46%), Gaps = 1/78 (1%)
Frame = +2
Query: 230 WACEPNQAQNGCKIYGNSCSCGYGCKTEYIYRTRRSCLNALRERSSNICSRT-PCIRGIC 406
+AC N +Q C I + + GY CK Y + ++ + + T PC +GIC
Sbjct: 257 YACISNNSQ--C-IDNLTNAQGYRCKCSNGYEGNPYIKDGCKDIDECLNNATYPC-KGIC 312
Query: 407 TQTIQDPGFTCKCEGTGY 460
T T+ + FTC C Y
Sbjct: 313 TNTLGN--FTCSCSPGSY 328
>04_03_0616 -
18052596-18053779,18053935-18054099,18056236-18056260,
18057259-18057312,18057354-18057619,18058633-18059371
Length = 810
Score = 30.3 bits (65), Expect = 1.8
Identities = 14/52 (26%), Positives = 24/52 (46%)
Frame = +2
Query: 311 EYIYRTRRSCLNALRERSSNICSRTPCIRGICTQTIQDPGFTCKCEGTGYYG 466
++ RT +C+ A + +S C +C + PG+ C C+ GY G
Sbjct: 188 DWAIRTANNCVEAQKNPASYACKGD---YSVCLNSTNGPGYICNCK-KGYQG 235
>03_01_0427 + 3296717-3296861,3296966-3297210
Length = 129
Score = 29.9 bits (64), Expect = 2.4
Identities = 10/27 (37%), Positives = 15/27 (55%)
Frame = +2
Query: 368 NICSRTPCIRGICTQTIQDPGFTCKCE 448
++C C +G CT PG+ C+CE
Sbjct: 50 SMCKTVACGKGNCTAASGFPGYRCECE 76
>11_01_0251 - 1926810-1928273
Length = 487
Score = 29.5 bits (63), Expect = 3.2
Identities = 20/68 (29%), Positives = 29/68 (42%), Gaps = 1/68 (1%)
Frame = -1
Query: 395 ECKAYESICLNFSLLVHSNKNVLSYKCTQFYNRNHNCTSYRIF-CTHSEPDWAHTPKRPI 219
E E + L++S + + K + S Y H+ + F C H P +A T RP
Sbjct: 419 EAAGMERVGLSYSGAMEARKLLQSCGWAGPYEVRHDAGGHGFFFCWHKRPLYAVTAWRPA 478
Query: 218 ESRRQQLR 195
SRR R
Sbjct: 479 ASRRGHTR 486
>12_02_0581 - 20785198-20785962,20786107-20786649
Length = 435
Score = 28.3 bits (60), Expect = 7.4
Identities = 20/70 (28%), Positives = 31/70 (44%), Gaps = 1/70 (1%)
Frame = -1
Query: 395 ECKAYESICLNFSL-LVHSNKNVLSYKCTQFYNRNHNCTSYRIFCTHSEPDWAHTPKRPI 219
+CK+ E +CL+F L L S+ L+ C+ R+ + +FC E TP
Sbjct: 213 KCKSLEKLCLHFILGLTDSDMITLAQNCSNL--RSISLQLEPLFCEGPEGRVFRTPLTDE 270
Query: 218 ESRRQQLRCR 189
+ L CR
Sbjct: 271 SLKALALGCR 280
>12_01_0906 +
8799284-8799441,8800865-8801690,8801933-8802055,
8802144-8802210,8802611-8802714,8802798-8802900,
8803103-8803401,8804009-8804263,8805471-8805776,
8805866-8806194,8806829-8806916,8807027-8807164,
8807438-8807458
Length = 938
Score = 28.3 bits (60), Expect = 7.4
Identities = 19/64 (29%), Positives = 27/64 (42%)
Frame = -2
Query: 652 NTQCQYEYYKNIVMKNYFIFHIYFKKKRNIGISFQSLLDNDALMWEERAWYCCSWTDSFT 473
N Q + K V + I + K RN+ F LL DAL W A+ + D+ +
Sbjct: 677 NKVYQENFEKCFVQQYSMIHRLETNKLRNVAKFFAHLLGTDALPWHVLAYIRLTEEDTTS 736
Query: 472 SFSI 461
S I
Sbjct: 737 SSRI 740
>02_04_0179 + 20682852-20684510,20684593-20684661,20684741-20684809,
20686779-20688206
Length = 1074
Score = 28.3 bits (60), Expect = 7.4
Identities = 15/49 (30%), Positives = 26/49 (53%)
Frame = +3
Query: 396 VAYARRQSRIPDSLVNAKAPGIMEKDVKESVQLQQYQARSSHMSASLSN 542
+A ++ RIPDS ++ G+ +KD KE+ Q + + HM+ N
Sbjct: 977 MAEIKKNMRIPDSTLDEH--GVWKKDQKEADQKKAKEEEEKHMAEIKKN 1023
>11_01_0319 -
2396835-2396951,2397035-2397105,2397219-2397297,
2397417-2397458,2397670-2397723,2397836-2397868,
2397959-2398039,2398144-2398230,2398313-2398388,
2398633-2398808,2398912-2399034,2399249-2399361,
2399521-2399632,2400054-2400273,2401986-2402314,
2402408-2402713,2403580-2403878,2404079-2404181,
2404266-2404369,2404840-2404906,2404911-2405076,
2405241-2405956
Length = 1157
Score = 27.9 bits (59), Expect = 9.8
Identities = 19/64 (29%), Positives = 27/64 (42%)
Frame = -2
Query: 652 NTQCQYEYYKNIVMKNYFIFHIYFKKKRNIGISFQSLLDNDALMWEERAWYCCSWTDSFT 473
N Q + K V + I + K RN+ F LL DAL W A+ + D+ +
Sbjct: 517 NKVYQDNFEKCFVQQYSMIHRLETNKLRNVAKFFAHLLGTDALPWHVLAYIRLTEEDTTS 576
Query: 472 SFSI 461
S I
Sbjct: 577 SSRI 580
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,747,276
Number of Sequences: 37544
Number of extensions: 414725
Number of successful extensions: 997
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 971
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 996
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2138915688
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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