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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P08_F_I13
         (862 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr 2||...   413   e-116
SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex s...   243   2e-65
SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces pomb...   235   6e-63
SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyce...   165   5e-42
SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces pombe...    93   3e-20
SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomy...    89   1e-18
SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit Arp42|Sc...    79   1e-15
SPCC550.12 |arp6||actin-like protein Arp6|Schizosaccharomyces po...    69   9e-13
SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit Arp9|Schizosa...    68   2e-12
SPAC664.02c |||actin-like protein Arp8 |Schizosaccharomyces pomb...    38   0.002
SPAC26A3.05 |chc1||clathrin heavy chain Chc1 |Schizosaccharomyce...    30   0.37 
SPBC1683.09c |frp1||ferric-chelate reductase Frp1|Schizosaccharo...    27   2.6  
SPAC1296.04 |mug65||spore wall assembly protein |Schizosaccharom...    27   4.5  
SPBC115.01c |rrp46||exosome subunit Rrp46 |Schizosaccharomyces p...    26   6.0  

>SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 375

 Score =  413 bits (1018), Expect = e-116
 Identities = 193/220 (87%), Positives = 203/220 (92%)
 Frame = +3

Query: 201 VMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIITNWDDMEKIWHHTFYNELRVAPEEHP 380
           +MVGMGQKDSYVGDEAQSKRGILTLKYPIEHGI+ NWDDMEKIWHHTFYNELRVAPEEHP
Sbjct: 43  IMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVNNWDDMEKIWHHTFYNELRVAPEEHP 102

Query: 381 VLLTEAPLNPKANREKMTQIMFETFNSPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHT 560
            LLTEAPLNPK+NREKMTQI+FETFN+PA YVAIQAVLSLYASGRTTGIVLDSGDGV+HT
Sbjct: 103 CLLTEAPLNPKSNREKMTQIIFETFNAPAFYVAIQAVLSLYASGRTTGIVLDSGDGVTHT 162

Query: 561 VPIYEGYALPHAILRLDLAGRDLTDYLMKILTERGYSFTTTAEREIVRDIKEKLCYVALD 740
           VPIYEGYALPHAI+RLDLAGRDLTDYLMKIL ERGY+F+TTAEREIVRDIKEKLCYVALD
Sbjct: 163 VPIYEGYALPHAIMRLDLAGRDLTDYLMKILMERGYTFSTTAEREIVRDIKEKLCYVALD 222

Query: 741 FXQEMXXXXXXXXLXKSYXLPDGQVITIGNXRFRCPEALF 860
           F QE+        L KSY LPDGQVITIGN RFR PEALF
Sbjct: 223 FEQELQTAAQSSSLEKSYELPDGQVITIGNERFRAPEALF 262



 Score = 84.2 bits (199), Expect = 2e-17
 Identities = 35/41 (85%), Positives = 40/41 (97%)
 Frame = +2

Query: 77  DDDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQG 199
           ++++AALV+DNGSGMCKAGFAGDDAPRAVFPSIVGRPRH G
Sbjct: 2   EEEIAALVIDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHHG 42


>SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex
           subunit Arp2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 390

 Score =  243 bits (595), Expect = 2e-65
 Identities = 108/213 (50%), Positives = 153/213 (71%)
 Frame = +3

Query: 222 KDSYVGDEAQSKRGILTLKYPIEHGIITNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAP 401
           KD  VGDEA++ R +L +KYP+E+GII ++++M ++W +TF+ +L++ P    +LLTE P
Sbjct: 50  KDVMVGDEAEAVRSLLQVKYPMENGIIRDFEEMNQLWDYTFFEKLKIDPRGRKILLTEPP 109

Query: 402 LNPKANREKMTQIMFETFNSPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGY 581
           +NP ANREKM + MFE +    +YVAIQAVLSLYA G ++G+V+DSGDGV+H VP+YE  
Sbjct: 110 MNPVANREKMCETMFERYGFGGVYVAIQAVLSLYAQGLSSGVVVDSGDGVTHIVPVYESV 169

Query: 582 ALPHAILRLDLAGRDLTDYLMKILTERGYSFTTTAEREIVRDIKEKLCYVALDFXQEMXX 761
            L H + RLD+AGRD T YL+ +L  +GY+F  TA+ E VR++KEKLCYV+ D   +   
Sbjct: 170 VLNHLVGRLDVAGRDATRYLISLLLRKGYAFNRTADFETVREMKEKLCYVSYDLELDHKL 229

Query: 762 XXXXXXLXKSYXLPDGQVITIGNXRFRCPEALF 860
                 L ++Y LPDG+VI +G+ R+ CPE LF
Sbjct: 230 SEETTVLMRNYTLPDGRVIKVGSERYECPECLF 262



 Score = 46.8 bits (106), Expect = 4e-06
 Identities = 20/33 (60%), Positives = 25/33 (75%)
 Frame = +2

Query: 89  AALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRP 187
           A +V+DNG+G  K G+A D+ PR  FPSIVGRP
Sbjct: 4   APIVLDNGTGFVKVGYAKDNFPRFQFPSIVGRP 36


>SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 379

 Score =  235 bits (575), Expect = 6e-63
 Identities = 111/221 (50%), Positives = 151/221 (68%), Gaps = 1/221 (0%)
 Frame = +3

Query: 201 VMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIITNWDDMEKIWHHTFYNE-LRVAPEEH 377
           VM    QKD +VG EAQ+ RG+L ++ PIE GII NW DME+IW + + ++ L   PEEH
Sbjct: 47  VMPSSIQKDMFVGSEAQNLRGLLKIQRPIERGIIQNWSDMEEIWSYIYSDQQLNTLPEEH 106

Query: 378 PVLLTEAPLNPKANREKMTQIMFETFNSPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSH 557
           P+LLTE PL    N+EK+ +  +ET N PA+  ++Q VL+LYAS RTTGIVL+ GDG++H
Sbjct: 107 PLLLTEPPLANIRNKEKIAEYFYETLNVPALSFSLQPVLALYASARTTGIVLECGDGLTH 166

Query: 558 TVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERGYSFTTTAEREIVRDIKEKLCYVAL 737
           +VPIY+G+++P AI + ++ GRD+TDYL   L + G+   ++AE+EIVR+IKEK CYVA 
Sbjct: 167 SVPIYDGFSIPSAIQQEEIGGRDVTDYLQLQLRKSGHELVSSAEKEIVREIKEKCCYVAS 226

Query: 738 DFXQEMXXXXXXXXLXKSYXLPDGQVITIGNXRFRCPEALF 860
           DF  E+           +Y LPD Q IT+G   F  PE LF
Sbjct: 227 DFRSEIESWTEHKPQIHTYQLPDNQTITLGTECFSAPEVLF 267



 Score = 52.8 bits (121), Expect = 6e-08
 Identities = 21/38 (55%), Positives = 28/38 (73%)
 Frame = +2

Query: 83  DVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQ 196
           D   + +DNGSG  KAGFAGDD P+ +FP+ VGR +H+
Sbjct: 8   DNQPICIDNGSGFIKAGFAGDDIPKCLFPTCVGRIKHE 45


>SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 427

 Score =  165 bits (402), Expect = 5e-42
 Identities = 100/258 (38%), Positives = 137/258 (53%), Gaps = 18/258 (6%)
 Frame = +3

Query: 141 ATTRPAPSSRPSWVALATRAVMVGMGQK---DSYVGDEAQSKRGI-LTLKYPIEHGIITN 308
           A++ PA SS+PS++A      +         D ++G++A  K     +L YPI HG I N
Sbjct: 42  ASSGPAVSSKPSYMASKGSGHLSSKRATEDLDFFIGNDALKKASAGYSLDYPIRHGQIEN 101

Query: 309 WDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNSPAMYVAIQA 488
           WD ME+ W  + +  LR  PE+H  LLTE PLNP  NRE   +IMFE+FN   +Y+A+QA
Sbjct: 102 WDHMERFWQQSLFKYLRCEPEDHYFLLTEPPLNPPENRENTAEIMFESFNCAGLYIAVQA 161

Query: 489 VLSLYASGRT--------TGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDYLM 644
           VL+L AS  +        TG V+DSGDGV+H +P+ EGY +  +I  + LAGRD+T ++ 
Sbjct: 162 VLALAASWTSSKVTDRSLTGTVVDSGDGVTHIIPVAEGYVIGSSIKTMPLAGRDVTYFVQ 221

Query: 645 KILTERGY--SFTTTAEREIVRDIKEKLCYVALDFXQEMXXXXXXXXLXKSYXLPD---- 806
            +L +R    S   TAER     IKE+ CYV  D  +E             Y        
Sbjct: 222 SLLRDRNEPDSSLKTAER-----IKEECCYVCPDIVKEFSRFDREPDRYLKYASESITGH 276

Query: 807 GQVITIGNXRFRCPEALF 860
              I +G  RF  PE  F
Sbjct: 277 STTIDVGFERFLAPEIFF 294



 Score = 40.7 bits (91), Expect = 3e-04
 Identities = 14/28 (50%), Positives = 23/28 (82%)
 Frame = +2

Query: 95  LVVDNGSGMCKAGFAGDDAPRAVFPSIV 178
           +++DNG+G  K G+AG+DAP  VFP+++
Sbjct: 8   IIMDNGTGYSKLGYAGNDAPSYVFPTVI 35


>SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 721

 Score = 93.5 bits (222), Expect = 3e-20
 Identities = 50/184 (27%), Positives = 96/184 (52%), Gaps = 3/184 (1%)
 Frame = +3

Query: 213 MGQKDSYVGDEAQSKRGILTL-KYPIEHGIITNWDDMEKIWHHTFYNELRVAPEEHPVLL 389
           + +  + VG++   + G  ++ + P E  +I+NWD ME++  +TF  +L +   EHP+ +
Sbjct: 62  LSRTSTLVGNDTLIEVGSRSIARSPFERNVISNWDLMEQVLDYTFL-KLGIDRMEHPICM 120

Query: 390 TEAPLNPKANREKMTQIMFETFNSPAMYVAIQAVLSLYASGR--TTGIVLDSGDGVSHTV 563
           TE   NP   R  MT+++FE +N+P++   I  + S Y + +  ++GIVL+ G+  SH +
Sbjct: 121 TEPLANPTYVRSTMTELLFELYNAPSVAYGIDGLFSFYHNTKPSSSGIVLNLGNAASHVI 180

Query: 564 PIYEGYALPHAILRLDLAGRDLTDYLMKILTERGYSFTTTAEREIVRDIKEKLCYVALDF 743
           P+  G  +     R+   G   + YL+K+   +  SF           +    C+V+ D+
Sbjct: 181 PVLNGERILSEAKRISWGGSQSSSYLLKLFQIKYPSFPIKMLPSQAELLMHDHCHVSSDY 240

Query: 744 XQEM 755
             ++
Sbjct: 241 THDI 244



 Score = 37.5 bits (83), Expect = 0.002
 Identities = 21/58 (36%), Positives = 34/58 (58%)
 Frame = +2

Query: 17  AAVESIPASPTQTHTKFKMCDDDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPR 190
           A  E + + PT +   F+   +D+  LV+DNGS   +AG+ G+  P+ VF ++V R R
Sbjct: 5   AVREPVFSGPTPS---FQNVSNDIP-LVIDNGSWQLRAGWGGEKDPKLVFDNLVSRYR 58


>SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 433

 Score = 88.6 bits (210), Expect = 1e-18
 Identities = 43/134 (32%), Positives = 69/134 (51%)
 Frame = +3

Query: 267 LTLKYPIEHGIITNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMF 446
           + +K  I +G + NWD    +W +    +L+  P EHP+L+TE   NP  NR K  + MF
Sbjct: 63  MEIKNAIRNGWVENWDVTVDLWRYGLEQQLKTNPLEHPILITEPFDNPPENRVKTLETMF 122

Query: 447 ETFNSPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRD 626
           E+   PA Y+A Q   + +ASG+ T  ++D G   S    IY+G+ L         +G  
Sbjct: 123 ESLRCPATYLAKQETCAAFASGKGTACLVDIGAERSSVSAIYDGFVLQKGYQVQHFSGNA 182

Query: 627 LTDYLMKILTERGY 668
           + D L + L ++ +
Sbjct: 183 INDILAQTLRDKNF 196



 Score = 41.5 bits (93), Expect = 1e-04
 Identities = 23/60 (38%), Positives = 35/60 (58%), Gaps = 2/60 (3%)
 Frame = +2

Query: 80  DDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGRDGR--YGPERLLRG*RGPE 253
           D+V+A+V+D GS   + GF+G+D P+ V PS  G    +  DGR  +G E + +   G E
Sbjct: 9   DEVSAIVIDPGSKWTRIGFSGEDIPKCVLPSYCG----EFSDGRRLFGEEYIYKSNPGME 64


>SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit
           Arp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 430

 Score = 78.6 bits (185), Expect = 1e-15
 Identities = 41/153 (26%), Positives = 77/153 (50%), Gaps = 2/153 (1%)
 Frame = +3

Query: 222 KDSYVGDEAQSKRGI--LTLKYPIEHGIITNWDDMEKIWHHTFYNELRVAPEEHPVLLTE 395
           ++ YV DE Q    I  + +K    +GII +W+     W      +L+V P E+ +++TE
Sbjct: 49  RNKYVVDELQIHAPIPGMEVKNGKSNGIIQDWESTLYTWERGLKEKLQVNPTEYAMMITE 108

Query: 396 APLNPKANREKMTQIMFETFNSPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYE 575
              NP++ R+++ +  FE  + PA Y+  QAV   +A+ ++T +++D G   +   P+ +
Sbjct: 109 PSWNPQSVRQQIMEAAFEQLHVPAFYLTKQAVCVAFANSKSTALIVDIGSDNASVTPVVD 168

Query: 576 GYALPHAILRLDLAGRDLTDYLMKILTERGYSF 674
           G  +   I +  LAG  L   + ++       F
Sbjct: 169 GLIIRKGIFKQSLAGDFLNANIEQLFNTMNIEF 201



 Score = 34.3 bits (75), Expect = 0.023
 Identities = 12/34 (35%), Positives = 23/34 (67%)
 Frame = +2

Query: 80  DDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVG 181
           +++ +LV+D GS   + G+AG+++P  + PS  G
Sbjct: 8   EEIPSLVIDPGSCWTRFGYAGEESPMTILPSYYG 41


>SPCC550.12 |arp6||actin-like protein Arp6|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 401

 Score = 68.9 bits (161), Expect = 9e-13
 Identities = 63/248 (25%), Positives = 105/248 (42%), Gaps = 38/248 (15%)
 Frame = +3

Query: 231 YVGDEAQSKRGILTLKYPIEH--GIITNWDDMEKIWHHTFYNELRVAPE--EHPVLLTEA 398
           ++G+E  +     TL++   H  G + +W     +W     N   + P   ++ +LLT+ 
Sbjct: 43  FLGNELANCNDFTTLQFRRAHEKGYLVHWSTETAVWDLVMRNVGVMEPSMADYSLLLTQP 102

Query: 399 PLNPKANREKMTQIMFETFNSPAMYVAIQAVLSLYASGRTTG--------------IVLD 536
                +      Q++FE F   A      A L  +  G  T               +V+D
Sbjct: 103 VFTMPSIEHNTIQLVFEEFQFDAYLPCTPAELIPWDHGSFTMNQEDAYTGQHGECVLVID 162

Query: 537 SGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERGYSFTTTAEREIVRDIKE 716
           SG   +H +P+ +      A+ R+D+ G+ LT+YL ++++ R Y+     E  IV +IKE
Sbjct: 163 SGYSFTHIIPVIDFSVQEQAVKRVDVGGKLLTNYLKEVISYRKYNM--MEETYIVNEIKE 220

Query: 717 KLCYVALDFXQEM--XXXXXXXXLXKSYXLPD------------------GQVITIGNXR 836
            +CYV+ +F ++M          L   Y LPD                   QV+ + N R
Sbjct: 221 SVCYVSQNFKEDMEICHEKPRSKLEICYALPDYSTGKHGYIVRDINQKIEQQVLNLSNER 280

Query: 837 FRCPEALF 860
           F  PE LF
Sbjct: 281 FMIPELLF 288


>SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit
           Arp9|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 523

 Score = 67.7 bits (158), Expect = 2e-12
 Identities = 43/149 (28%), Positives = 70/149 (46%), Gaps = 4/149 (2%)
 Frame = +3

Query: 282 PIEHGIITNWDDMEKIWHHTFYNELRVAPEE----HPVLLTEAPLNPKANREKMTQIMFE 449
           PI+ G + +W+ ++  W H  Y+ L   P +    +PV L         +RE  TQ  FE
Sbjct: 113 PIQRGRVVDWEALKAFWKH-LYSLLLKDPNDTTFRYPVCLVIPTYWSLYDRELATQFFFE 171

Query: 450 TFNSPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDL 629
               P   +A + ++ LYA G   G+V+D G   +   PI +G  +  A  +L L GR +
Sbjct: 172 ECQVPGFTIAYEPLMGLYAIGILHGLVIDIGYEKTDITPILDGQIIFTATQQLPLGGRYM 231

Query: 630 TDYLMKILTERGYSFTTTAEREIVRDIKE 716
           T +L  +L E   +  ++ +     DI E
Sbjct: 232 TQHLQNLLRESLPTLKSSGQYVSKEDITE 260


>SPAC664.02c |||actin-like protein Arp8 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 620

 Score = 37.9 bits (84), Expect = 0.002
 Identities = 28/146 (19%), Positives = 67/146 (45%), Gaps = 12/146 (8%)
 Frame = +3

Query: 273 LKYPIEHGIITNWD---------DMEKIWHHTFYNELRVAPEE---HPVLLTEAPLNPKA 416
           L YPI+ G+    D         D+ +I+ ++  + L++   +   + V+     L  + 
Sbjct: 198 LFYPIKSGVFNESDYASSQQLLADIYEIFKYSITSLLQIPVSQLSQYSVIFIVPDLYDRV 257

Query: 417 NREKMTQIMFETFNSPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHA 596
             EK+  I+F   +     +  +++ + + +G +   V+D G   +    + EG  +P++
Sbjct: 258 YVEKILDILFFDLHFGKAAIVQESLCTSFGAGMSAACVVDMGAQKTSISCVEEGVVVPNS 317

Query: 597 ILRLDLAGRDLTDYLMKILTERGYSF 674
            ++++  G D+T   MK+L    + +
Sbjct: 318 RIKINYGGDDITLLFMKLLMRSHFPY 343


>SPAC26A3.05 |chc1||clathrin heavy chain Chc1 |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1666

 Score = 30.3 bits (65), Expect = 0.37
 Identities = 18/53 (33%), Positives = 31/53 (58%), Gaps = 5/53 (9%)
 Frame = +3

Query: 342  FYNELRVAPEEHPVLLTE--APLNPKANREKMTQIMFETFNSPAM---YVAIQ 485
            +Y  L    E+HP+LLT+  A L P+ +  ++ +I  ++ N+P +    VAIQ
Sbjct: 1399 YYRALNFYLEQHPMLLTDLLAALTPRIDHPRVIRIFEKSENTPLILNFMVAIQ 1451


>SPBC1683.09c |frp1||ferric-chelate reductase
           Frp1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 564

 Score = 27.5 bits (58), Expect = 2.6
 Identities = 13/34 (38%), Positives = 20/34 (58%)
 Frame = +3

Query: 186 LATRAVMVGMGQKDSYVGDEAQSKRGILTLKYPI 287
           L+  A+M+G     +Y+G  AQ KR +LT +  I
Sbjct: 160 LSQYAIMIGAIHGFAYIGLAAQGKRALLTARVTI 193


>SPAC1296.04 |mug65||spore wall assembly protein
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 248

 Score = 26.6 bits (56), Expect = 4.5
 Identities = 9/16 (56%), Positives = 9/16 (56%)
 Frame = +1

Query: 568 STKVTLCPTPSSVWTW 615
           STK   CP PS  W W
Sbjct: 52  STKTATCPDPSWEWAW 67


>SPBC115.01c |rrp46||exosome subunit Rrp46 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 226

 Score = 26.2 bits (55), Expect = 6.0
 Identities = 10/25 (40%), Positives = 18/25 (72%)
 Frame = +3

Query: 384 LLTEAPLNPKANREKMTQIMFETFN 458
           +L  APL+ +   +KM +++FET+N
Sbjct: 181 VLETAPLHAEEVSKKMKELLFETYN 205


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,050,325
Number of Sequences: 5004
Number of extensions: 60461
Number of successful extensions: 233
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 202
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 226
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 428468660
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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