Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P08_F_I13
         (862 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB023025-1|BAA74592.1|  133|Apis mellifera actin protein.              55   7e-10
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             24   2.1  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    23   3.6  
AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                23   3.6  
U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodops...    23   4.8  
AY343324-1|AAQ21381.1|  156|Apis mellifera vacuolar H+ ATP synth...    22   8.4  

>AB023025-1|BAA74592.1|  133|Apis mellifera actin protein.
          Length = 133

 Score = 55.2 bits (127), Expect = 7e-10
 Identities = 26/37 (70%), Positives = 26/37 (70%)
 Frame = +3

Query: 750 EMXXXXXXXXLXKSYXLPDGQVITIGNXRFRCPEALF 860
           EM        L KSY LPDGQVITIGN RFRCPEALF
Sbjct: 1   EMATAASSSSLEKSYELPDGQVITIGNERFRCPEALF 37


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 23.8 bits (49), Expect = 2.1
 Identities = 17/58 (29%), Positives = 25/58 (43%)
 Frame = +3

Query: 42  PQHKHTQSSRCATTMLLRL*STMAPACARPVSPATTRPAPSSRPSWVALATRAVMVGM 215
           PQ   + SSR A + +      + P  A  V+ A T   P+  P W      A +VG+
Sbjct: 445 PQSDSSSSSRSAESPMS---VQVDPMAASVVAAALTGTYPTLLPQWCLPPREAPLVGV 499


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
            protein.
          Length = 1770

 Score = 23.0 bits (47), Expect = 3.6
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = +3

Query: 354  LRVAPEEHPVLLTEAPLNPKANREKM 431
            LR+ P  H V+ T   +NP  + EK+
Sbjct: 1461 LRLGPCWHAVMTTYPRINPDNHNEKL 1486


>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 23.0 bits (47), Expect = 3.6
 Identities = 16/58 (27%), Positives = 28/58 (48%), Gaps = 1/58 (1%)
 Frame = -3

Query: 716 LLDVTNDFPLSGGGERVTPLGEDLHEVVGQVATSQVQTEDGVGQS-VTFVDGYGVGDT 546
           ++D+T     S  G+ V     +L+ +VG  A   +  E+G G + VT  + +   DT
Sbjct: 18  MVDLTQCLQESSTGQSVEFSPMELNALVGTPAAPNMPAEEGEGMAGVTGEEPFDTLDT 75


>U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodopsin
           protein.
          Length = 377

 Score = 22.6 bits (46), Expect = 4.8
 Identities = 8/17 (47%), Positives = 13/17 (76%)
 Frame = -3

Query: 362 DTQLIVEGVVPDLLHVI 312
           + Q +V+ V PD+LH+I
Sbjct: 21  NNQTVVDKVPPDMLHLI 37


>AY343324-1|AAQ21381.1|  156|Apis mellifera vacuolar H+ ATP synthase
           16 kDa proteolipidsubunit protein.
          Length = 156

 Score = 21.8 bits (44), Expect = 8.4
 Identities = 9/18 (50%), Positives = 11/18 (61%)
 Frame = -2

Query: 63  FVCVCVGDAGIDSTAARP 10
           F    VGDAG+  TA +P
Sbjct: 109 FAIGIVGDAGVRGTAQQP 126


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 206,561
Number of Sequences: 438
Number of extensions: 3971
Number of successful extensions: 14
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 27795333
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)