Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P08_F_I12
         (546 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC25G10.01 ||SPAC2C4.18|RNA-binding protein|Schizosaccharomyce...    25   5.5  
SPAPB8E5.08 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    25   5.5  
SPBC9B6.04c |tuf1||mitochondrial translation elongation factor E...    25   7.3  
SPAC6F12.17 |rna14||mRNA cleavage and polyadenylation specificit...    25   7.3  
SPAC1039.05c |||conserved fungal protein|Schizosaccharomyces pom...    25   9.6  

>SPAC25G10.01 ||SPAC2C4.18|RNA-binding protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 297

 Score = 25.4 bits (53), Expect = 5.5
 Identities = 15/42 (35%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
 Frame = -2

Query: 155 TPIFRNINGR-FKIILLYVEQKKRSTVAKPNRGRALIYERRR 33
           T    N+N + F   +L V++ KRS    P  G+ + Y+RRR
Sbjct: 156 TSAIDNLNSQEFYGRVLNVQKAKRSRPHSPTPGKYMGYDRRR 197


>SPAPB8E5.08 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 103

 Score = 25.4 bits (53), Expect = 5.5
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = -3

Query: 460 STHIYIYIEFVTVLCGNKIFNFI 392
           S +IYIY  F + LC   +F +I
Sbjct: 78  SIYIYIYFFFYSFLCSPYLFKYI 100


>SPBC9B6.04c |tuf1||mitochondrial translation elongation factor
           EF-Tu Tuf1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 439

 Score = 25.0 bits (52), Expect = 7.3
 Identities = 13/27 (48%), Positives = 15/27 (55%)
 Frame = -3

Query: 136 LMEDLKSYYYT*NRKKDLPLLSQIVDV 56
           LME + SY     RK D+P L  I DV
Sbjct: 234 LMEAVDSYITLPERKTDVPFLMAIEDV 260


>SPAC6F12.17 |rna14||mRNA cleavage and polyadenylation specificity
           factor complex subunit Rna14|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 733

 Score = 25.0 bits (52), Expect = 7.3
 Identities = 11/22 (50%), Positives = 13/22 (59%)
 Frame = +1

Query: 190 LSVRLGADCSIPCYVHSNRSKD 255
           LSVRL      P +VH+NR  D
Sbjct: 610 LSVRLNGGNGFPGHVHNNREDD 631


>SPAC1039.05c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 781

 Score = 24.6 bits (51), Expect = 9.6
 Identities = 13/28 (46%), Positives = 16/28 (57%)
 Frame = -3

Query: 136 LMEDLKSYYYT*NRKKDLPLLSQIVDVL 53
           L E  K + Y   R K LPLL  ++DVL
Sbjct: 735 LSEKAKDHVYV--RSKTLPLLKCVIDVL 760


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,925,660
Number of Sequences: 5004
Number of extensions: 38495
Number of successful extensions: 75
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 73
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 75
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 225926624
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)