Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P08_F_I12
         (546 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_1037 - 23438205-23441219,23443509-23444513,23444627-23446708     29   1.8  
11_04_0367 - 16840732-16843428,16844425-16844760                       29   2.4  
06_03_1130 - 27826384-27827039,27827800-27828031,27828120-278284...    28   5.6  

>07_03_1037 - 23438205-23441219,23443509-23444513,23444627-23446708
          Length = 2033

 Score = 29.5 bits (63), Expect = 1.8
 Identities = 20/68 (29%), Positives = 34/68 (50%), Gaps = 3/68 (4%)
 Frame = -2

Query: 359  RKASRIVTLPRTLSTAGLDCFTARLKQDSTLRPAKSLLRF---E*T*HGMLQSAPNLTDN 189
            R  +R++ + RT+    +DCF  RL+ + +     S LRF   +     +L SA  L DN
Sbjct: 1004 RTEARLLIMTRTVVFVAVDCFKNRLEFNPSEEAEHSYLRFADVKRQCRSVLTSASELADN 1063

Query: 188  NHCLAKDK 165
             + + + K
Sbjct: 1064 AYRVKRVK 1071


>11_04_0367 - 16840732-16843428,16844425-16844760
          Length = 1010

 Score = 29.1 bits (62), Expect = 2.4
 Identities = 17/65 (26%), Positives = 33/65 (50%)
 Frame = -3

Query: 316 QQAWIVSPRD*NKTPHYAQPNLCFDLSEHNMGCCSPLPISQTTITA*LKIKIHLHRYFET 137
           Q++W +  R      +  Q NL  D+++  +  C  LP++  T+ + L+ + H  R+ + 
Sbjct: 355 QESWTLFKRTVTTPENAIQGNLV-DIAKKIVEKCDRLPLAIKTLGSMLRYETHESRWIDI 413

Query: 136 LMEDL 122
           L  DL
Sbjct: 414 LESDL 418


>06_03_1130 - 27826384-27827039,27827800-27828031,27828120-27828491,
            27829243-27829449,27829611-27829704,27829806-27829870,
            27829946-27830398,27830467-27830760,27830837-27831295,
            27831367-27831588,27831755-27831968,27832039-27832494,
            27833280-27833389,27833468-27833644,27833758-27833979,
            27834048-27834167,27834274-27834383,27834552-27834607,
            27835252-27835440,27835602-27835775,27836066-27836281,
            27837066-27837106,27837971-27837986,27838330-27838415,
            27838737-27838910,27839093-27839149,27839720-27840064,
            27840175-27840216,27840377-27840496,27840575-27840724,
            27840830-27841534,27841609-27841954,27842978-27843080,
            27844817-27844860,27845905-27846101,27846322-27846344,
            27846802-27847122,27847406-27847579,27847843-27848047,
            27848817-27848880,27850097-27850278,27850291-27850350,
            27850688-27850748,27851249-27851313,27851491-27851569,
            27851656-27852021,27852442-27852790,27852887-27852989,
            27853103-27853373,27854296-27854405,27854515-27854652
          Length = 3364

 Score = 27.9 bits (59), Expect = 5.6
 Identities = 13/38 (34%), Positives = 20/38 (52%)
 Frame = +3

Query: 327  SWQCNDSTCFSLKLIHRALLAHMKLKILFPHSTVTNSM 440
            S  C D+  + LKLI   L   + +K+LFP +    S+
Sbjct: 2060 SQPCCDNVLYLLKLIQELLFNQIGIKLLFPSNPSEESL 2097


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,600,366
Number of Sequences: 37544
Number of extensions: 218721
Number of successful extensions: 453
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 450
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 453
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1222086348
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)