Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P08_F_I08
         (793 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z49068-4|CAC42319.1|  705|Caenorhabditis elegans Hypothetical pr...    29   5.0  
U53139-11|AAK18936.2|  353|Caenorhabditis elegans Serpentine rec...    28   6.7  
AC024848-4|AAK68543.2| 1020|Caenorhabditis elegans Hypothetical ...    28   6.7  
U40941-5|AAA81710.1|  300|Caenorhabditis elegans Hypothetical pr...    28   8.8  

>Z49068-4|CAC42319.1|  705|Caenorhabditis elegans Hypothetical
           protein K01C8.3b protein.
          Length = 705

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 17/46 (36%), Positives = 23/46 (50%)
 Frame = +2

Query: 170 VLD*KLAKQKV*SYLNMFNKRTRILKKYRN*ILLSDMIHSRNYNRL 307
           V D K    K+  +LNM N R      YR+  L+  + HS+  NRL
Sbjct: 629 VSDPKCYNPKIVRHLNMANHRKMSQDLYRDRTLMQTISHSQRPNRL 674


>U53139-11|AAK18936.2|  353|Caenorhabditis elegans Serpentine
           receptor, class w protein71 protein.
          Length = 353

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 12/40 (30%), Positives = 25/40 (62%)
 Frame = -3

Query: 683 NSSSFLQTVDYLFPHGCLSYISWYCVICCNLSTLCFSLKS 564
           ++SS+L   +Y+  +G +    +YC++  + S +CF+L S
Sbjct: 288 SASSYL---NYVIGYGSVFISFFYCIVATSHSVICFALSS 324


>AC024848-4|AAK68543.2| 1020|Caenorhabditis elegans Hypothetical
           protein Y67D8A.1 protein.
          Length = 1020

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 11/35 (31%), Positives = 22/35 (62%), Gaps = 1/35 (2%)
 Frame = +2

Query: 524 WVVSTST-PDLLFHHFSMKSRVYSNYNKLHSTRIY 625
           W++ + T PDLL H+F+++ R+   Y +    R++
Sbjct: 502 WILWSRTHPDLLVHNFTLRERLEKVYRRACQLRLW 536


>U40941-5|AAA81710.1|  300|Caenorhabditis elegans Hypothetical
           protein F35C8.5 protein.
          Length = 300

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 8/23 (34%), Positives = 16/23 (69%)
 Frame = -3

Query: 674 SFLQTVDYLFPHGCLSYISWYCV 606
           +F+ T+ ++FP  CL+Y  W+ +
Sbjct: 190 TFITTIPWIFPTHCLTYWIWFFI 212


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,128,953
Number of Sequences: 27780
Number of extensions: 354537
Number of successful extensions: 880
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 846
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 880
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1924757034
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)