Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P08_F_I07
         (857 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC777.02 |||transcription factor |Schizosaccharomyces pombe|ch...    31   0.28 
SPCC1840.12 ||SPCC965.02|OPT oligopeptide transporter family|Sch...    28   1.5  
SPCC18.14c |rpp0||60S acidic ribosomal protein Rpp0 |Schizosacch...    28   1.5  
SPAC343.07 |mug28||RNA-binding protein Mug28|Schizosaccharomyces...    27   2.6  
SPCC737.09c |hmt1|SPCC74.08c|ATP-binding cassette-type vacuolar ...    27   3.4  
SPAC6G9.04 |mug79||meiotically upregulated gene Mug79|Schizosacc...    26   7.9  
SPCC188.03 |cnd3||condensin subunit Cnd3 |Schizosaccharomyces po...    26   7.9  

>SPCC777.02 |||transcription factor |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 632

 Score = 30.7 bits (66), Expect = 0.28
 Identities = 22/98 (22%), Positives = 46/98 (46%), Gaps = 3/98 (3%)
 Frame = +1

Query: 376 NVNVPEKIIVCLDVCYDNPNSLYRFGDGTTFSPINMLKRILDFFFHTKHAISKKTEFA-- 549
           N+ +    ++ +  C  + ++++   DG T S I  L++ + FF H    ISK  + A  
Sbjct: 502 NLGLHHTPLIIVYACIVSCSTVFMLFDGATPSEIVALEQDIKFFLHVLTKISKNWDLASK 561

Query: 550 -LITLQDAGACWTQNFTSNVKDLISAIDYAHAEEATSD 660
            +  +Q     +  N  +N  D    +D+++ ++ T D
Sbjct: 562 SINLIQKKSTMYDTNARANDTD----VDFSNDKQNTHD 595


>SPCC1840.12 ||SPCC965.02|OPT oligopeptide transporter
           family|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 791

 Score = 28.3 bits (60), Expect = 1.5
 Identities = 11/27 (40%), Positives = 14/27 (51%)
 Frame = -3

Query: 474 WRKCCAITKTV*RIWIVIANI*ADNYF 394
           W  CC  T  V  IWIV+  +   NY+
Sbjct: 346 WATCCIFTSFVFWIWIVLPGLYYQNYW 372


>SPCC18.14c |rpp0||60S acidic ribosomal protein Rpp0
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 312

 Score = 28.3 bits (60), Expect = 1.5
 Identities = 13/35 (37%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
 Frame = +1

Query: 304 VLENEDVKEIQEQVLAN-LEKPNLPNVNVPEKIIV 405
           V  N D+KE++E ++AN +  P  PN   P  + V
Sbjct: 87  VFTNADLKEVRETIIANVIAAPARPNAIAPLDVFV 121


>SPAC343.07 |mug28||RNA-binding protein Mug28|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 609

 Score = 27.5 bits (58), Expect = 2.6
 Identities = 10/24 (41%), Positives = 17/24 (70%)
 Frame = -1

Query: 134 VRIIEKFYTYLFEDFLLEIYIKCP 63
           + IIEKF+   +E  +L+++IK P
Sbjct: 324 IEIIEKFHAIAYEGSILQLFIKQP 347


>SPCC737.09c |hmt1|SPCC74.08c|ATP-binding cassette-type vacuolar
           membrane transporter Hmt1|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 830

 Score = 27.1 bits (57), Expect = 3.4
 Identities = 12/41 (29%), Positives = 24/41 (58%)
 Frame = +1

Query: 301 SVLENEDVKEIQEQVLANLEKPNLPNVNVPEKIIVCLDVCY 423
           S+++ E + EI E+    +EKPN P++ V +  ++   V +
Sbjct: 551 SIIDTERLLEIFEEKPTVVEKPNAPDLKVTQGKVIFSHVSF 591


>SPAC6G9.04 |mug79||meiotically upregulated gene
           Mug79|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1318

 Score = 25.8 bits (54), Expect = 7.9
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = +1

Query: 292 EDTSVLENEDVKEIQEQVLANLEKP 366
           E T++L N+D   +Q Q LA  E P
Sbjct: 345 EKTALLMNQDSNSVQPQALAAAESP 369


>SPCC188.03 |cnd3||condensin subunit Cnd3 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 875

 Score = 25.8 bits (54), Expect = 7.9
 Identities = 27/117 (23%), Positives = 52/117 (44%), Gaps = 5/117 (4%)
 Frame = +1

Query: 304 VLENEDVKEIQEQVLANLEKPNLPNVNVPEKIIVCLDVCYDNPNSLY-----RFGDGTTF 468
           +L+N+   E++  VL N+E   + N  +P  +    DV   N   +Y     + GD    
Sbjct: 166 LLQNDPSSEVRRSVLLNIE---VSNSTLPFILERARDVDAANRKCVYARVLPKIGDFRYL 222

Query: 469 SPINMLKRILDFFFHTKHAISKKTEFALITLQDAGACWTQNFTSNVKDLISAIDYAH 639
           S I    RIL +  + +    +K    ++  Q     W +N  +N+ +L+  +D ++
Sbjct: 223 S-IKKRVRILKWGLNDRDESVEKAAADMLAYQ-----WIENADNNLLELLERLDVSN 273


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,494,657
Number of Sequences: 5004
Number of extensions: 73843
Number of successful extensions: 192
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 184
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 192
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 426466470
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)