Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P08_F_I07
(857 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
CR533526-1|CAG38557.1| 329|Homo sapiens HSPC142 protein. 99 1e-20
BC091491-1|AAH91491.1| 329|Homo sapiens chromosome 19 open read... 99 1e-20
BC006244-1|AAH06244.1| 329|Homo sapiens HSPC142 protein protein. 99 1e-20
BC000788-1|AAH00788.1| 329|Homo sapiens HSPC142 protein protein. 99 1e-20
AK000578-1|BAA91268.1| 329|Homo sapiens protein ( Homo sapiens ... 99 1e-20
BC012010-1|AAH12010.1| 475|Homo sapiens serum amyloid A-like 1 ... 31 4.1
>CR533526-1|CAG38557.1| 329|Homo sapiens HSPC142 protein.
Length = 329
Score = 99 bits (238), Expect = 1e-20
Identities = 50/160 (31%), Positives = 89/160 (55%)
Frame = +1
Query: 373 PNVNVPEKIIVCLDVCYDNPNSLYRFGDGTTFSPINMLKRILDFFFHTKHAISKKTEFAL 552
P VN PEK+I+CLD+ + +G+ + +N+ +++++ F TKH I K EFAL
Sbjct: 87 PRVNCPEKVIICLDLSEEMSLPKLESFNGSKTNALNVSQKMIEMFVRTKHKIDKSHEFAL 146
Query: 553 ITLQDAGACWTQNFTSNVKDLISAIDYAHAEEATSDTFDFEKVYELIRHHIEIPMMKPGE 732
+ + D A W TS+ ++L S + E A+ TF+ E ++ LI+ E+P+ + +
Sbjct: 147 VVVNDDTA-WLSGLTSDPRELCSCL--YDLETASCSTFNLEGLFSLIQQKTELPVTENVQ 203
Query: 733 SLLPPPYIVRLLILYGRSNCVPVIPHEDPCFQYIRSQIYF 852
+ +PPPY+VR +++Y R C P +P + + +F
Sbjct: 204 T-IPPPYVVRTILVYSRPPCQPQFSLTEPMKKMFQCPYFF 242
>BC091491-1|AAH91491.1| 329|Homo sapiens chromosome 19 open reading
frame 62 protein.
Length = 329
Score = 99 bits (238), Expect = 1e-20
Identities = 50/160 (31%), Positives = 89/160 (55%)
Frame = +1
Query: 373 PNVNVPEKIIVCLDVCYDNPNSLYRFGDGTTFSPINMLKRILDFFFHTKHAISKKTEFAL 552
P VN PEK+I+CLD+ + +G+ + +N+ +++++ F TKH I K EFAL
Sbjct: 87 PRVNCPEKVIICLDLSEEMSLPKLESFNGSKTNALNVSQKMIEMFVRTKHKIDKSHEFAL 146
Query: 553 ITLQDAGACWTQNFTSNVKDLISAIDYAHAEEATSDTFDFEKVYELIRHHIEIPMMKPGE 732
+ + D A W TS+ ++L S + E A+ TF+ E ++ LI+ E+P+ + +
Sbjct: 147 VVVNDDTA-WLSGLTSDPRELCSCL--YDLETASCSTFNLEGLFSLIQQKTELPVTENVQ 203
Query: 733 SLLPPPYIVRLLILYGRSNCVPVIPHEDPCFQYIRSQIYF 852
+ +PPPY+VR +++Y R C P +P + + +F
Sbjct: 204 T-IPPPYVVRTILVYSRPPCQPQFSLTEPMKKMFQCPYFF 242
>BC006244-1|AAH06244.1| 329|Homo sapiens HSPC142 protein protein.
Length = 329
Score = 99 bits (238), Expect = 1e-20
Identities = 50/160 (31%), Positives = 89/160 (55%)
Frame = +1
Query: 373 PNVNVPEKIIVCLDVCYDNPNSLYRFGDGTTFSPINMLKRILDFFFHTKHAISKKTEFAL 552
P VN PEK+I+CLD+ + +G+ + +N+ +++++ F TKH I K EFAL
Sbjct: 87 PRVNCPEKVIICLDLSEEMSLPKLESFNGSKTNALNVSQKMIEMFVRTKHKIDKSHEFAL 146
Query: 553 ITLQDAGACWTQNFTSNVKDLISAIDYAHAEEATSDTFDFEKVYELIRHHIEIPMMKPGE 732
+ + D A W TS+ ++L S + E A+ TF+ E ++ LI+ E+P+ + +
Sbjct: 147 VVVNDDTA-WLSGLTSDPRELCSCL--YDLETASCSTFNLEGLFSLIQQKTELPVTENVQ 203
Query: 733 SLLPPPYIVRLLILYGRSNCVPVIPHEDPCFQYIRSQIYF 852
+ +PPPY+VR +++Y R C P +P + + +F
Sbjct: 204 T-IPPPYVVRTILVYSRPPCQPQFSLTEPMKKMFQCPYFF 242
>BC000788-1|AAH00788.1| 329|Homo sapiens HSPC142 protein protein.
Length = 329
Score = 99 bits (238), Expect = 1e-20
Identities = 50/160 (31%), Positives = 89/160 (55%)
Frame = +1
Query: 373 PNVNVPEKIIVCLDVCYDNPNSLYRFGDGTTFSPINMLKRILDFFFHTKHAISKKTEFAL 552
P VN PEK+I+CLD+ + +G+ + +N+ +++++ F TKH I K EFAL
Sbjct: 87 PRVNCPEKVIICLDLSEEMSLPKLESFNGSKTNALNVSQKMIEMFVRTKHKIDKSHEFAL 146
Query: 553 ITLQDAGACWTQNFTSNVKDLISAIDYAHAEEATSDTFDFEKVYELIRHHIEIPMMKPGE 732
+ + D A W TS+ ++L S + E A+ TF+ E ++ LI+ E+P+ + +
Sbjct: 147 VVVNDDTA-WLSGLTSDPRELCSCL--YDLETASCSTFNLEGLFSLIQQKTELPVTENVQ 203
Query: 733 SLLPPPYIVRLLILYGRSNCVPVIPHEDPCFQYIRSQIYF 852
+ +PPPY+VR +++Y R C P +P + + +F
Sbjct: 204 T-IPPPYVVRTILVYSRPPCQPQFSLTEPMKKMFQCPYFF 242
>AK000578-1|BAA91268.1| 329|Homo sapiens protein ( Homo sapiens
cDNA FLJ20571 fis, clone REC01040. ).
Length = 329
Score = 99 bits (238), Expect = 1e-20
Identities = 50/160 (31%), Positives = 89/160 (55%)
Frame = +1
Query: 373 PNVNVPEKIIVCLDVCYDNPNSLYRFGDGTTFSPINMLKRILDFFFHTKHAISKKTEFAL 552
P VN PEK+I+CLD+ + +G+ + +N+ +++++ F TKH I K EFAL
Sbjct: 87 PRVNCPEKVIICLDLSEEMSLPKLESFNGSKTNALNVSQKMIEMFVRTKHKIDKSHEFAL 146
Query: 553 ITLQDAGACWTQNFTSNVKDLISAIDYAHAEEATSDTFDFEKVYELIRHHIEIPMMKPGE 732
+ + D A W TS+ ++L S + E A+ TF+ E ++ LI+ E+P+ + +
Sbjct: 147 VVVNDDTA-WLSGLTSDPRELCSCL--YDLETASCSTFNLEGLFSLIQQKTELPVTENVQ 203
Query: 733 SLLPPPYIVRLLILYGRSNCVPVIPHEDPCFQYIRSQIYF 852
+ +PPPY+VR +++Y R C P +P + + +F
Sbjct: 204 T-IPPPYVVRTILVYSRPPCQPQFSLTEPMKKMFQCPYFF 242
>BC012010-1|AAH12010.1| 475|Homo sapiens serum amyloid A-like 1
protein.
Length = 475
Score = 31.5 bits (68), Expect = 4.1
Identities = 23/83 (27%), Positives = 34/83 (40%), Gaps = 2/83 (2%)
Frame = -1
Query: 338 SCISLTSSFSRTDVSS--YCLESLSDAPCELLEDTVSGLSXXXXXXXXXXIGVTTQSCSS 165
S S T RTD++ + L+ L D CE L + L+ ++ Q CSS
Sbjct: 374 SAESNTEETKRTDLTQDDFHLKILKDILCEFLSNIFQALTKETVAQGVKEGQLSKQKCSS 433
Query: 164 GLNPIGTKFYVRIIEKFYTYLFE 96
+ FY ++E F L E
Sbjct: 434 AFQNL-LPFYSPVVEDFIKILRE 455
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 114,585,475
Number of Sequences: 237096
Number of extensions: 2334583
Number of successful extensions: 4962
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 4816
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4941
length of database: 76,859,062
effective HSP length: 89
effective length of database: 55,757,518
effective search space used: 10928473528
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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