Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P08_F_H24
         (838 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC006830-7|AAK68613.2|  479|Caenorhabditis elegans Hypothetical ...    30   2.3  
AF067211-6|AAC16989.1|  308|Caenorhabditis elegans Serpentine re...    28   7.2  
AF067211-5|AAW88420.1|  329|Caenorhabditis elegans Serpentine re...    28   7.2  
U21317-1|AAA62524.2|  627|Caenorhabditis elegans Na/h exchanger ...    28   9.5  
AF497824-1|AAM18102.1|  644|Caenorhabditis elegans putative Na-H...    28   9.5  

>AC006830-7|AAK68613.2|  479|Caenorhabditis elegans Hypothetical
           protein ZK105.6 protein.
          Length = 479

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 16/62 (25%), Positives = 30/62 (48%)
 Frame = +3

Query: 96  LNKNYEELQQIENTNPHHQNIVRRIYSQLGKCISIGTIANIQVCMLYLII*NKYLNKTCI 275
           L KNY+++ +I  T P +++    +Y    +C  I  I      +  + I +  +N T +
Sbjct: 297 LKKNYDKVVKIITTKPKNESNCADLYYMFNECRCIANIFRASQSVYEVSIIDMSINDTRL 356

Query: 276 LK 281
           LK
Sbjct: 357 LK 358


>AF067211-6|AAC16989.1|  308|Caenorhabditis elegans Serpentine
           receptor, class z protein85, isoform a protein.
          Length = 308

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 12/28 (42%), Positives = 19/28 (67%)
 Frame = +2

Query: 533 FVACIVNIVFYLTLFLNKFIIFFSTSTP 616
           FV  I++ V  LT+F++  + F +TSTP
Sbjct: 38  FVMVIMSYVLLLTIFMSCLLTFSTTSTP 65


>AF067211-5|AAW88420.1|  329|Caenorhabditis elegans Serpentine
           receptor, class z protein85, isoform b protein.
          Length = 329

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 12/28 (42%), Positives = 19/28 (67%)
 Frame = +2

Query: 533 FVACIVNIVFYLTLFLNKFIIFFSTSTP 616
           FV  I++ V  LT+F++  + F +TSTP
Sbjct: 59  FVMVIMSYVLLLTIFMSCLLTFSTTSTP 86


>U21317-1|AAA62524.2|  627|Caenorhabditis elegans Na/h exchanger
           protein 2 protein.
          Length = 627

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = +3

Query: 102 KNYEELQQIENTNPHHQNIVRRIYSQL 182
           K   E  Q+E  N H +N++  IYS+L
Sbjct: 434 KPIAEFLQVEKKNVHSKNMIEHIYSEL 460


>AF497824-1|AAM18102.1|  644|Caenorhabditis elegans putative Na-H
           exchanger isoform 2 protein.
          Length = 644

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = +3

Query: 102 KNYEELQQIENTNPHHQNIVRRIYSQL 182
           K   E  Q+E  N H +N++  IYS+L
Sbjct: 451 KPIAEFLQVEKKNVHSKNMIEHIYSEL 477


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,178,472
Number of Sequences: 27780
Number of extensions: 368204
Number of successful extensions: 812
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 790
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 812
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2066533546
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)