Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P08_F_H24
         (838 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              27   0.28 
DQ325082-1|ABD14096.1|  179|Apis mellifera complementary sex det...    22   6.1  
AY739659-1|AAU85298.1|  288|Apis mellifera hyperpolarization-act...    22   6.1  
AY739658-1|AAU85297.1|  664|Apis mellifera hyperpolarization-act...    22   6.1  
AY569721-1|AAS86674.1|  400|Apis mellifera complementary sex det...    22   6.1  
AY280848-1|AAQ16312.1|  632|Apis mellifera hyperpolarization-act...    22   6.1  

>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 26.6 bits (56), Expect = 0.28
 Identities = 13/42 (30%), Positives = 22/42 (52%)
 Frame = +1

Query: 634  LLQ*KAECTQITERILWIEELQVKIQGVHMCVVQSIFEHSTI 759
            +LQ      Q+ E  L+I+E+     G + C V++ F H T+
Sbjct: 1316 VLQSSDRLRQLPEGSLFIKEVDRTDAGEYSCYVENTFGHDTV 1357


>DQ325082-1|ABD14096.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 22.2 bits (45), Expect = 6.1
 Identities = 9/23 (39%), Positives = 12/23 (52%)
 Frame = -1

Query: 595 NNKFI*KQG*VKYNVYNTCNKMF 527
           +NK I      KYN  N C K++
Sbjct: 86  SNKTIHNNNNYKYNYNNNCKKLY 108


>AY739659-1|AAU85298.1|  288|Apis mellifera
           hyperpolarization-activated ion channelvariant T
           protein.
          Length = 288

 Score = 22.2 bits (45), Expect = 6.1
 Identities = 10/17 (58%), Positives = 13/17 (76%)
 Frame = +3

Query: 495 DLCIMLLLVNKNILLHV 545
           DLC++LLLV   I+L V
Sbjct: 92  DLCMLLLLVANLIILPV 108


>AY739658-1|AAU85297.1|  664|Apis mellifera
           hyperpolarization-activated ion channelvariant L
           protein.
          Length = 664

 Score = 22.2 bits (45), Expect = 6.1
 Identities = 10/17 (58%), Positives = 13/17 (76%)
 Frame = +3

Query: 495 DLCIMLLLVNKNILLHV 545
           DLC++LLLV   I+L V
Sbjct: 92  DLCMLLLLVANLIILPV 108


>AY569721-1|AAS86674.1|  400|Apis mellifera complementary sex
           determiner protein.
          Length = 400

 Score = 22.2 bits (45), Expect = 6.1
 Identities = 8/21 (38%), Positives = 13/21 (61%)
 Frame = +2

Query: 197 YWNNRKHTGMYVIPNYLK*IP 259
           Y+NN  +  +Y   NY++ IP
Sbjct: 317 YYNNNNYKKLYYNINYIEQIP 337


>AY280848-1|AAQ16312.1|  632|Apis mellifera
           hyperpolarization-activated ion channel protein.
          Length = 632

 Score = 22.2 bits (45), Expect = 6.1
 Identities = 10/17 (58%), Positives = 13/17 (76%)
 Frame = +3

Query: 495 DLCIMLLLVNKNILLHV 545
           DLC++LLLV   I+L V
Sbjct: 92  DLCMLLLLVANLIILPV 108


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 224,580
Number of Sequences: 438
Number of extensions: 5024
Number of successful extensions: 11
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 26824317
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)