Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P08_F_H21
         (538 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_02_0625 + 19438768-19438889,19438897-19439065,19439131-194391...    28   5.4  
03_02_1010 - 13194002-13194339,13194421-13194573,13194661-131948...    28   5.4  
07_03_1578 + 27872636-27872840,27872928-27873175,27873215-278732...    27   7.2  
03_02_0614 + 9863622-9863675,9864353-9864604,9865125-9865268,986...    27   7.2  
01_07_0353 + 42962769-42962972,42963062-42963138,42963571-429638...    27   7.2  
08_02_1461 - 27299891-27301870                                         27   9.5  
08_02_0719 + 20388246-20390756,20391159-20391263                       27   9.5  
04_03_0264 - 13619329-13621708,13621742-13621830                       27   9.5  

>08_02_0625 +
           19438768-19438889,19438897-19439065,19439131-19439174,
           19439431-19440061
          Length = 321

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 16/53 (30%), Positives = 26/53 (49%)
 Frame = +3

Query: 84  SQEVLPPVKNTYKKTAYIQVPKNTGTVGLPSNI*PARWKIFLSSFKPSTGSSL 242
           +++ L P  N Y   AYI++ K T    + S+I P+ +K        S G +L
Sbjct: 63  TEDFLTPSLNCYVTNAYIRIDKVTAVASIDSSIYPS-YKKSACKILTSAGGTL 114


>03_02_1010 -
           13194002-13194339,13194421-13194573,13194661-13194809,
           13194932-13195184,13195282-13195469,13195684-13195841,
           13196093-13196307,13196410-13196614
          Length = 552

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 12/31 (38%), Positives = 16/31 (51%)
 Frame = -2

Query: 216 KTKGRSSTELVKYCSVDRRSQCFSELVYMLF 124
           K KGR +  L   CS+  R  C+SE    +F
Sbjct: 366 KNKGRMARYLANKCSIASRIDCYSESATAVF 396


>07_03_1578 +
           27872636-27872840,27872928-27873175,27873215-27873295,
           27873665-27873822,27874391-27874450,27874655-27874873,
           27875100-27875201,27875352-27875500,27875582-27875734,
           27875839-27876194
          Length = 576

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 12/31 (38%), Positives = 17/31 (54%)
 Frame = -2

Query: 216 KTKGRSSTELVKYCSVDRRSQCFSELVYMLF 124
           + KGR +  L   CS+  R  C+SEL   +F
Sbjct: 384 RNKGRIARYLANKCSIASRIDCYSELNTSVF 414


>03_02_0614 +
           9863622-9863675,9864353-9864604,9865125-9865268,
           9865350-9866024,9866117-9866317,9866446-9866646
          Length = 508

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 17/53 (32%), Positives = 25/53 (47%)
 Frame = +1

Query: 1   RPADTFKPKRIIASRQK*AGWWYLSARTHKRSYHQ*KTHTKKQHIYKFRKTLG 159
           +P DTF PK ++  +    G  Y  AR    SY+        +HIY F+  +G
Sbjct: 216 QPVDTFCPKHLMGGKVHITGIAYSYAREILVSYND-------EHIYLFQNNMG 261


>01_07_0353 + 42962769-42962972,42963062-42963138,42963571-42963817,
            42963907-42964476,42964998-42965171,42965514-42965640,
            42965719-42965828,42966707-42966907,42966999-42967966,
            42968110-42968358,42968760-42969105
          Length = 1090

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 18/53 (33%), Positives = 24/53 (45%)
 Frame = +2

Query: 5    RPIPSNQNALLLHGRNRQGGGTYPRGLTRGPTTSKKHIQKNSIYTSSEKHWDR 163
            RP+P + NA L      +G   Y R  T      K H+QK      SE+H D+
Sbjct: 951  RPLPMDLNAFLCKENQLRGMFEYARRCT-----FKDHLQKLEHNDDSEEHTDK 998


>08_02_1461 - 27299891-27301870
          Length = 659

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 13/25 (52%), Positives = 15/25 (60%)
 Frame = +2

Query: 35  LLHGRNRQGGGTYPRGLTRGPTTSK 109
           LL GR R GGG + RGL   P  S+
Sbjct: 290 LLRGRRRGGGGGHRRGLFVFPLVSR 314


>08_02_0719 + 20388246-20390756,20391159-20391263
          Length = 871

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 12/34 (35%), Positives = 19/34 (55%)
 Frame = +2

Query: 107 KKHIQKNSIYTSSEKHWDRRSTEQYLTSSVEDLP 208
           K H Q +SI +  E H D  +  + L +S+ +LP
Sbjct: 382 KDHSQWSSIISELESHGDLGAATEILETSINELP 415


>04_03_0264 - 13619329-13621708,13621742-13621830
          Length = 822

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 12/27 (44%), Positives = 16/27 (59%)
 Frame = +3

Query: 417 KSRFMCKMYSVLRCTCKFVLFKL*IND 497
           KSR  CK   +  C+C+ VLF+   ND
Sbjct: 379 KSRDDCKQACLKNCSCRAVLFRYYHND 405


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,493,202
Number of Sequences: 37544
Number of extensions: 317114
Number of successful extensions: 822
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 798
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 822
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1186491600
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)