Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P08_F_H21
         (538 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z67884-1|CAA91807.1|  347|Caenorhabditis elegans Hypothetical pr...    29   1.6  
Z71181-4|CAA94897.1|  486|Caenorhabditis elegans Hypothetical pr...    29   2.1  
U70858-9|AAB09181.2|  300|Caenorhabditis elegans Serpentine rece...    29   2.1  
Z81546-1|CAB04449.2|  859|Caenorhabditis elegans Hypothetical pr...    29   2.8  
Z67881-3|CAD44099.1| 1405|Caenorhabditis elegans Hypothetical pr...    28   3.7  
Z50797-11|CAA90676.2| 1405|Caenorhabditis elegans Hypothetical p...    28   3.7  
Z50797-9|CAL36516.1|  640|Caenorhabditis elegans Hypothetical pr...    28   3.7  
AF016442-4|AAB65915.1|  361|Caenorhabditis elegans Serpentine re...    28   3.7  

>Z67884-1|CAA91807.1|  347|Caenorhabditis elegans Hypothetical
           protein T14G8.2 protein.
          Length = 347

 Score = 29.5 bits (63), Expect = 1.6
 Identities = 12/25 (48%), Positives = 16/25 (64%)
 Frame = +2

Query: 86  TRGPTTSKKHIQKNSIYTSSEKHWD 160
           T GP T K H+ KN+ +T S+ H D
Sbjct: 83  TIGPVTEKAHVFKNTWWTHSKNHRD 107


>Z71181-4|CAA94897.1|  486|Caenorhabditis elegans Hypothetical
           protein K07C5.4 protein.
          Length = 486

 Score = 29.1 bits (62), Expect = 2.1
 Identities = 13/25 (52%), Positives = 14/25 (56%)
 Frame = -2

Query: 216 KTKGRSSTELVKYCSVDRRSQCFSE 142
           K KGR S  L   CS+  R  CFSE
Sbjct: 369 KNKGRVSRYLANKCSIAARVDCFSE 393


>U70858-9|AAB09181.2|  300|Caenorhabditis elegans Serpentine
           receptor, class x protein36 protein.
          Length = 300

 Score = 29.1 bits (62), Expect = 2.1
 Identities = 12/50 (24%), Positives = 23/50 (46%)
 Frame = -2

Query: 228 WKA*KTKGRSSTELVKYCSVDRRSQCFSELVYMLFFCMCFLLVVGPLVSP 79
           WK  K + +          +D   Q FS+ +Y+L    CF+++   + +P
Sbjct: 190 WKVRKVRSQHGKHKFTNKEIDFLKQSFSQAIYLLVTTSCFVIIPMYITNP 239


>Z81546-1|CAB04449.2|  859|Caenorhabditis elegans Hypothetical
           protein F53A2.1 protein.
          Length = 859

 Score = 28.7 bits (61), Expect = 2.8
 Identities = 15/35 (42%), Positives = 19/35 (54%)
 Frame = -2

Query: 159 SQCFSELVYMLFFCMCFLLVVGPLVSPRG*VPPPC 55
           S  FS ++  L+FC       GPLVSP G +P  C
Sbjct: 33  STTFSSIILSLYFC-------GPLVSPMGPLPARC 60


>Z67881-3|CAD44099.1| 1405|Caenorhabditis elegans Hypothetical
           protein T22H6.6a protein.
          Length = 1405

 Score = 28.3 bits (60), Expect = 3.7
 Identities = 10/24 (41%), Positives = 12/24 (50%)
 Frame = +1

Query: 61  WWYLSARTHKRSYHQ*KTHTKKQH 132
           WWY  A   K  YH+  T  K+ H
Sbjct: 880 WWYSLAADQKAEYHKLATQVKEAH 903


>Z50797-11|CAA90676.2| 1405|Caenorhabditis elegans Hypothetical
           protein T22H6.6a protein.
          Length = 1405

 Score = 28.3 bits (60), Expect = 3.7
 Identities = 10/24 (41%), Positives = 12/24 (50%)
 Frame = +1

Query: 61  WWYLSARTHKRSYHQ*KTHTKKQH 132
           WWY  A   K  YH+  T  K+ H
Sbjct: 880 WWYSLAADQKAEYHKLATQVKEAH 903


>Z50797-9|CAL36516.1|  640|Caenorhabditis elegans Hypothetical
           protein T22H6.6b protein.
          Length = 640

 Score = 28.3 bits (60), Expect = 3.7
 Identities = 10/24 (41%), Positives = 12/24 (50%)
 Frame = +1

Query: 61  WWYLSARTHKRSYHQ*KTHTKKQH 132
           WWY  A   K  YH+  T  K+ H
Sbjct: 115 WWYSLAADQKAEYHKLATQVKEAH 138


>AF016442-4|AAB65915.1|  361|Caenorhabditis elegans Serpentine
           receptor, class n protein1 protein.
          Length = 361

 Score = 28.3 bits (60), Expect = 3.7
 Identities = 11/24 (45%), Positives = 16/24 (66%), Gaps = 1/24 (4%)
 Frame = -3

Query: 155 SVFRNLYICCFF-VCVFYWW*DLL 87
           +VF ++  CCF  VC+FY W  +L
Sbjct: 111 TVFTSINDCCFLRVCIFYQWTHIL 134


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,733,699
Number of Sequences: 27780
Number of extensions: 287967
Number of successful extensions: 705
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 695
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 703
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1070714938
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)