Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P08_F_H18
         (316 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC663.04 |rpl39||60S ribosomal protein L39|Schizosaccharomyces...    87   4e-19
SPAC23C4.12 |hhp2||serine/threonine protein kinase Hhp2 |Schizos...    28   0.38 
SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31 |Schizo...    27   0.67 
SPBC11B10.06 |sws1||SWIM domain containing-Srs2 interacting prot...    27   0.89 
SPBC56F2.04 |utp20||U3 snoRNP protein Utp20|Schizosaccharomyces ...    25   3.6  
SPBC1A4.10c |pmc1|SPBP23A10.01c, med14|mediator complex subunit ...    24   4.7  
SPBC428.02c |eca39|SPBC582.12c|branched chain amino acid aminotr...    24   4.7  
SPCC794.07 |||dihydrolipoamide S-acetyltransferase E2 |Schizosac...    23   8.3  
SPBC2F12.02c |mrpl7||mitochondrial ribosomal protein subunit L7|...    23   8.3  

>SPCC663.04 |rpl39||60S ribosomal protein L39|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 51

 Score = 87.4 bits (207), Expect = 4e-19
 Identities = 35/51 (68%), Positives = 43/51 (84%)
 Frame = +3

Query: 33  MSAHKTFIIKRKLAKKLKQNRPIPQWVRMRTGNTIRYNAKRRHWRRTKLKL 185
           M +HK+F  K+KLAK  +QNRPIPQW+R+RTGNT+ YN KRRHWRRTKL +
Sbjct: 1   MPSHKSFRTKQKLAKAARQNRPIPQWIRLRTGNTVHYNMKRRHWRRTKLNI 51


>SPAC23C4.12 |hhp2||serine/threonine protein kinase Hhp2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 400

 Score = 27.9 bits (59), Expect = 0.38
 Identities = 13/31 (41%), Positives = 18/31 (58%)
 Frame = -3

Query: 197 FTSLQLELCPSPVTPLSVISNSVSCAHPYPL 105
           ++S+ L    +P TP S  +N V CA P PL
Sbjct: 332 YSSIPLPAERNPKTPQSFSTNIVQCASPSPL 362


>SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31
            |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1224

 Score = 27.1 bits (57), Expect = 0.67
 Identities = 11/25 (44%), Positives = 17/25 (68%)
 Frame = -3

Query: 167  SPVTPLSVISNSVSCAHPYPLRNGS 93
            +P TP++V S++V+ AH Y    GS
Sbjct: 982  NPYTPIAVASSTVNPAHTYKPHGGS 1006


>SPBC11B10.06 |sws1||SWIM domain containing-Srs2 interacting protein
           1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 209

 Score = 26.6 bits (56), Expect = 0.89
 Identities = 17/51 (33%), Positives = 25/51 (49%)
 Frame = -3

Query: 155 PLSVISNSVSCAHPYPLRNGSVLFQLFGQFALNNKRLMGRHFEQCKLSKQS 3
           P  +I +S S  HP PL +G VL +   +   NNK  +   +  C  S+ S
Sbjct: 109 PAMLILDSKSI-HPLPLTDGEVLHRWECEVDSNNKTTIDLKYWYCSCSQFS 158


>SPBC56F2.04 |utp20||U3 snoRNP protein Utp20|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 2493

 Score = 24.6 bits (51), Expect = 3.6
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = +1

Query: 10   FDNLHCSKCRPIRRLLLSANWPKS*NKTD 96
            FD+L  +  RP++ +L   N PKS  K D
Sbjct: 1783 FDSLS-TLLRPVKNVLFETNVPKSLRKVD 1810


>SPBC1A4.10c |pmc1|SPBP23A10.01c, med14|mediator complex subunit
           Pmc1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 879

 Score = 24.2 bits (50), Expect = 4.7
 Identities = 15/33 (45%), Positives = 19/33 (57%)
 Frame = -1

Query: 229 YRVFIRLHLTHSQAYNLSFVLLQ*RLLALYRIV 131
           YRVFI LHL    A   +FVL +  L  +Y I+
Sbjct: 236 YRVFIELHLNEEIA--AAFVLQKPILPLIYNIL 266


>SPBC428.02c |eca39|SPBC582.12c|branched chain amino acid
           aminotransferase Eca39|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 380

 Score = 24.2 bits (50), Expect = 4.7
 Identities = 8/32 (25%), Positives = 16/32 (50%)
 Frame = +3

Query: 81  LKQNRPIPQWVRMRTGNTIRYNAKRRHWRRTK 176
           +K+ +P+P+W  ++ G     +     W R K
Sbjct: 23  VKELKPLPEWKSLKFGENFTDHMLIMKWNREK 54


>SPCC794.07 |||dihydrolipoamide S-acetyltransferase E2
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 483

 Score = 23.4 bits (48), Expect = 8.3
 Identities = 13/44 (29%), Positives = 22/44 (50%)
 Frame = -3

Query: 182 LELCPSPVTPLSVISNSVSCAHPYPLRNGSVLFQLFGQFALNNK 51
           +++  +  TP  +I+  +   H   L   S L + +GQ A NNK
Sbjct: 344 VDISMAVATPSGLITPVIRNTHALGLAEISTLAKDYGQRARNNK 387


>SPBC2F12.02c |mrpl7||mitochondrial ribosomal protein subunit
           L7|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 287

 Score = 23.4 bits (48), Expect = 8.3
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = +3

Query: 45  KTFIIKRKLAKKLKQNRPIPQW 110
           +T  +K+KL K    NRP+P W
Sbjct: 18  RTITVKQKLGK----NRPLPGW 35


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 972,180
Number of Sequences: 5004
Number of extensions: 16589
Number of successful extensions: 56
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 56
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 56
length of database: 2,362,478
effective HSP length: 63
effective length of database: 2,047,226
effective search space used: 83936266
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)