Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P08_F_H18
         (316 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U53148-4|AAB37070.1|   51|Caenorhabditis elegans Ribosomal prote...    94   2e-20
AF303271-1|AAG50229.1|   51|Caenorhabditis elegans ribosomal pro...    94   2e-20
AF039037-4|AAC48229.3|  311|Caenorhabditis elegans Protein kinas...    28   1.6  
AC024765-8|AAF60530.1|  165|Caenorhabditis elegans Hypothetical ...    27   2.8  
Z95559-7|CAB76730.2|  329|Caenorhabditis elegans Hypothetical pr...    27   3.8  
Z22179-9|CAD90178.1|  428|Caenorhabditis elegans Hypothetical pr...    27   3.8  
Z22179-8|CAA80170.2|  431|Caenorhabditis elegans Hypothetical pr...    27   3.8  
Z22179-7|CAA80167.2|  429|Caenorhabditis elegans Hypothetical pr...    27   3.8  
U61952-10|AAQ01532.2|  217|Caenorhabditis elegans Hypothetical p...    27   3.8  
U97012-3|AAK39144.2|  588|Caenorhabditis elegans Groundhog (hedg...    26   6.6  
U46753-2|AAA85760.1|  894|Caenorhabditis elegans Hypothetical pr...    25   8.7  
U43375-1|AAA83618.1|  709|Caenorhabditis elegans Sulfatase domai...    25   8.7  

>U53148-4|AAB37070.1|   51|Caenorhabditis elegans Ribosomal protein,
           large subunitprotein 39 protein.
          Length = 51

 Score = 94.3 bits (224), Expect = 2e-20
 Identities = 42/51 (82%), Positives = 46/51 (90%)
 Frame = +3

Query: 33  MSAHKTFIIKRKLAKKLKQNRPIPQWVRMRTGNTIRYNAKRRHWRRTKLKL 185
           MSA K   IKRKLAKK KQNRP+PQWVRM+TGNT++YNAKRRHWRRTKLKL
Sbjct: 1   MSALKKSFIKRKLAKKQKQNRPMPQWVRMKTGNTMKYNAKRRHWRRTKLKL 51


>AF303271-1|AAG50229.1|   51|Caenorhabditis elegans ribosomal
           protein L39 protein.
          Length = 51

 Score = 94.3 bits (224), Expect = 2e-20
 Identities = 42/51 (82%), Positives = 46/51 (90%)
 Frame = +3

Query: 33  MSAHKTFIIKRKLAKKLKQNRPIPQWVRMRTGNTIRYNAKRRHWRRTKLKL 185
           MSA K   IKRKLAKK KQNRP+PQWVRM+TGNT++YNAKRRHWRRTKLKL
Sbjct: 1   MSALKKSFIKRKLAKKQKQNRPMPQWVRMKTGNTMKYNAKRRHWRRTKLKL 51


>AF039037-4|AAC48229.3|  311|Caenorhabditis elegans Protein kinase
           protein 34 protein.
          Length = 311

 Score = 27.9 bits (59), Expect = 1.6
 Identities = 20/49 (40%), Positives = 27/49 (55%), Gaps = 4/49 (8%)
 Frame = -3

Query: 182 LELCPSPVTPLSVISNSVSCAHPY----PLRNGSVLFQLFGQFALNNKR 48
           L++ P P++PLSV++N      PY    PL  GS     FGQ AL + R
Sbjct: 4   LQVVPPPISPLSVLANHPD--RPYEVLKPLGQGS-----FGQVALVSNR 45


>AC024765-8|AAF60530.1|  165|Caenorhabditis elegans Hypothetical
           protein Y39A3CR.8 protein.
          Length = 165

 Score = 27.1 bits (57), Expect = 2.8
 Identities = 12/40 (30%), Positives = 24/40 (60%)
 Frame = +3

Query: 60  KRKLAKKLKQNRPIPQWVRMRTGNTIRYNAKRRHWRRTKL 179
           K+K+ K +++   +P   +  TGNT   N ++RH R+ ++
Sbjct: 68  KKKVVKSVEKTARMPD--KPETGNTATGNPEKRHKRKKRV 105


>Z95559-7|CAB76730.2|  329|Caenorhabditis elegans Hypothetical
           protein Y41E3.14 protein.
          Length = 329

 Score = 26.6 bits (56), Expect = 3.8
 Identities = 11/33 (33%), Positives = 18/33 (54%)
 Frame = -3

Query: 212 ITFNTFTSLQLELCPSPVTPLSVISNSVSCAHP 114
           I F T T +   +C S ++ +  I  SV C++P
Sbjct: 72  IVFLTLTDMSATVCSSIISGVLYIKGSVFCSYP 104


>Z22179-9|CAD90178.1|  428|Caenorhabditis elegans Hypothetical
           protein F58A4.7c protein.
          Length = 428

 Score = 26.6 bits (56), Expect = 3.8
 Identities = 14/40 (35%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
 Frame = -3

Query: 200 TFTSLQLELC-PSPVTPLSVISNSVSCAHPYPLRNGSVLF 84
           T  SL+  +  P+P+ P+SV  +S S + P PL    ++F
Sbjct: 303 TLPSLETTVIRPTPLPPISVEISSPSLSTPSPLTAAPIIF 342


>Z22179-8|CAA80170.2|  431|Caenorhabditis elegans Hypothetical
           protein F58A4.7b protein.
          Length = 431

 Score = 26.6 bits (56), Expect = 3.8
 Identities = 14/40 (35%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
 Frame = -3

Query: 200 TFTSLQLELC-PSPVTPLSVISNSVSCAHPYPLRNGSVLF 84
           T  SL+  +  P+P+ P+SV  +S S + P PL    ++F
Sbjct: 305 TLPSLETTVIRPTPLPPISVEISSPSLSTPSPLTAAPIIF 344


>Z22179-7|CAA80167.2|  429|Caenorhabditis elegans Hypothetical
           protein F58A4.7a protein.
          Length = 429

 Score = 26.6 bits (56), Expect = 3.8
 Identities = 14/40 (35%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
 Frame = -3

Query: 200 TFTSLQLELC-PSPVTPLSVISNSVSCAHPYPLRNGSVLF 84
           T  SL+  +  P+P+ P+SV  +S S + P PL    ++F
Sbjct: 303 TLPSLETTVIRPTPLPPISVEISSPSLSTPSPLTAAPIIF 342


>U61952-10|AAQ01532.2|  217|Caenorhabditis elegans Hypothetical
           protein F42A9.9 protein.
          Length = 217

 Score = 26.6 bits (56), Expect = 3.8
 Identities = 10/30 (33%), Positives = 18/30 (60%)
 Frame = +1

Query: 121 AQETLFDITLRGVTGEGQSSSCKLVNVLNV 210
           A   +FD+T+ G   +GQ  +C L+ V+ +
Sbjct: 23  ALSVIFDLTMIGAVKKGQMLNCLLIVVITI 52


>U97012-3|AAK39144.2|  588|Caenorhabditis elegans Groundhog
           (hedgehog-like family)protein 9 protein.
          Length = 588

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 16/54 (29%), Positives = 25/54 (46%)
 Frame = -3

Query: 170 PSPVTPLSVISNSVSCAHPYPLRNGSVLFQLFGQFALNNKRLMGRHFEQCKLSK 9
           P P   L V        +PY  RNG   ++    +  NN++  GR+ ++ K SK
Sbjct: 229 PPPPPKLQVYPPQQLAENPYQTRNGVNNYRSRNSYGTNNRK-HGRNGKKGKSSK 281


>U46753-2|AAA85760.1|  894|Caenorhabditis elegans Hypothetical
           protein C34F11.5 protein.
          Length = 894

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 13/47 (27%), Positives = 25/47 (53%)
 Frame = +3

Query: 45  KTFIIKRKLAKKLKQNRPIPQWVRMRTGNTIRYNAKRRHWRRTKLKL 185
           + FI++++L KKL++     +  R R    +RY  K+   R+  L +
Sbjct: 718 RRFIMRKRLKKKLRKRYRGAKRRRKRQKYRLRYRKKKYQLRKGALNM 764


>U43375-1|AAA83618.1|  709|Caenorhabditis elegans Sulfatase domain
           protein protein 1 protein.
          Length = 709

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 15/43 (34%), Positives = 22/43 (51%), Gaps = 2/43 (4%)
 Frame = +3

Query: 48  TFIIKRKLAKKLKQ--NRPIPQWVRMRTGNTIRYNAKRRHWRR 170
           T +I+R    KLK+  +R I Q  +    N +    KRR W+R
Sbjct: 400 TILIERGKMPKLKKIRDRYIKQKKKFNKENRLSKECKRRKWQR 442


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,432,400
Number of Sequences: 27780
Number of extensions: 96756
Number of successful extensions: 247
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 243
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 247
length of database: 12,740,198
effective HSP length: 71
effective length of database: 10,767,818
effective search space used: 355337994
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)