Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P08_F_H16
(747 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_04_0932 - 29488626-29488877,29488965-29489201,29489578-294899... 33 0.32
05_01_0253 + 1934043-1934201,1934456-1934536,1935008-1935199,193... 31 0.74
01_05_0719 + 24580765-24581090,24581285-24581401,24582739-245828... 30 2.2
06_03_0647 + 23122074-23122187,23123423-23123488,23124467-231246... 29 3.9
09_01_0055 - 907719-907748,907757-907824,908972-909098 29 5.2
07_01_0784 + 6083477-6083653,6086052-6086238,6086672-6086844,608... 29 5.2
06_01_0557 - 3959122-3959689,3960084-3960280,3960882-3961082,396... 29 5.2
08_01_0661 - 5708088-5708131,5708217-5710048,5710527-5710625,571... 28 6.9
04_04_1449 - 33683791-33683940,33684036-33684110,33684849-336849... 28 6.9
03_02_0095 + 5593353-5593638,5593739-5594130,5594316-5594816 28 6.9
01_06_0880 + 32687018-32687060,32687142-32687219,32687323-326875... 28 6.9
01_02_0068 - 10803815-10804391,10804487-10804722,10804808-108049... 28 6.9
06_03_1445 - 30209354-30209396,30209798-30209875,30210220-302102... 28 9.1
06_03_1433 - 30129184-30129226,30129628-30129705,30130050-301301... 28 9.1
06_03_1416 + 30027066-30027663,30027739-30027848,30027927-300280... 28 9.1
02_05_1091 + 34044999-34045082,34046848-34047048,34047312-340475... 28 9.1
>04_04_0932 -
29488626-29488877,29488965-29489201,29489578-29489942,
29490825-29491137
Length = 388
Score = 32.7 bits (71), Expect = 0.32
Identities = 17/52 (32%), Positives = 28/52 (53%)
Frame = +3
Query: 558 GVFEPHNGLEAARLIMQRMAAEILFPPPSANTDEEIRDRLXNAFVSVEKAYI 713
GV++ H G EA+R I +AA ++ T E D + NAF + E+ ++
Sbjct: 81 GVYDGHGGAEASRFISNHLAAHLVRLAQERGTISE--DIVRNAFSATEEGFL 130
>05_01_0253 +
1934043-1934201,1934456-1934536,1935008-1935199,
1935313-1935548,1935638-1936220
Length = 416
Score = 31.5 bits (68), Expect = 0.74
Identities = 21/65 (32%), Positives = 33/65 (50%), Gaps = 8/65 (12%)
Frame = +3
Query: 555 YGVFEPHNGLEAARLIMQRMAAEILFP----PPSANTDE----EIRDRLXNAFVSVEKAY 710
YGVF+ H GL+AA M+R A LF P ++ DE + + + AF+ + A
Sbjct: 143 YGVFDGHGGLDAA-AYMKRHAMRFLFEDSEFPQASQVDETYVQSVENSVRRAFLQADLAL 201
Query: 711 IENYD 725
++ D
Sbjct: 202 ADDLD 206
>01_05_0719 +
24580765-24581090,24581285-24581401,24582739-24582866,
24582938-24583036,24583126-24583284,24584113-24584199,
24584324-24584415,24584570-24584644,24585257-24585424
Length = 416
Score = 29.9 bits (64), Expect = 2.2
Identities = 21/63 (33%), Positives = 30/63 (47%), Gaps = 1/63 (1%)
Frame = +3
Query: 471 YFSKLGGHSNANDDYLCFFCQTEDN-FCLYGVFEPHNGLEAARLIMQRMAAEILFPPPSA 647
Y S G +N D Y + +DN L+G+F+ H G AA + + + E L PS
Sbjct: 157 YSSFRGRRANMEDFYDIKSSKVDDNQINLFGIFDGHGGSHAAEHLKKHL-FENLLKHPSF 215
Query: 648 NTD 656
TD
Sbjct: 216 ITD 218
>06_03_0647 +
23122074-23122187,23123423-23123488,23124467-23124676,
23124849-23125060,23125641-23126208
Length = 389
Score = 29.1 bits (62), Expect = 3.9
Identities = 16/54 (29%), Positives = 26/54 (48%)
Frame = +3
Query: 555 YGVFEPHNGLEAARLIMQRMAAEILFPPPSANTDEEIRDRLXNAFVSVEKAYIE 716
YGVF+ H G AA + +A I+ + EI L +AF+ + A+ +
Sbjct: 129 YGVFDGHGGKHAADFVCSNLARFIV---EDEDFPREIEKALSSAFLQTDAAFAD 179
>09_01_0055 - 907719-907748,907757-907824,908972-909098
Length = 74
Score = 28.7 bits (61), Expect = 5.2
Identities = 17/50 (34%), Positives = 23/50 (46%)
Frame = +1
Query: 550 VYMEYLSHTMVLKRPGLSCKEWQLKYYFHHPQPTQMKRYETDLXMPLCQL 699
VY + HT K+ G + L YY H+PQ Q K + T + L L
Sbjct: 2 VYPQSQVHTASSKQAG----PYMLHYYSHNPQENQNKLFATKISTSLTSL 47
>07_01_0784 +
6083477-6083653,6086052-6086238,6086672-6086844,
6087520-6087678,6088677-6088817,6088880-6088941,
6089120-6089255,6091142-6091236,6091333-6091448,
6091538-6091667,6091757-6091811,6091889-6091930,
6092534-6092656
Length = 531
Score = 28.7 bits (61), Expect = 5.2
Identities = 21/75 (28%), Positives = 31/75 (41%), Gaps = 6/75 (8%)
Frame = +3
Query: 531 QTEDNFCLYGVFEPHNGLEAARLIMQRMAAEILFPPPSANTDEEI------RDRLXNAFV 692
Q + F L+G+F+ H G AAR + + + T E++ D L AF
Sbjct: 275 QGVEQFGLFGIFDGHGGDGAARAVSKIFPENVATLLSHHETKEKVLSYSDASDVLRYAFT 334
Query: 693 SVEKAYIENYDGMIA 737
E A Y+G A
Sbjct: 335 MTEAAIDHEYEGCTA 349
>06_01_0557 -
3959122-3959689,3960084-3960280,3960882-3961082,
3962300-3962383,3962667-3962783
Length = 388
Score = 28.7 bits (61), Expect = 5.2
Identities = 17/56 (30%), Positives = 27/56 (48%), Gaps = 9/56 (16%)
Frame = +3
Query: 474 FSKLGGHSNANDDYLC-------FFCQTEDNFCL--YGVFEPHNGLEAARLIMQRM 614
+S +GG D ++C F Q+ DN + YGVF+ H G +AA + +
Sbjct: 97 WSDIGGRQYMEDTHVCITDLAKNFGYQSVDNEAISFYGVFDGHGGKDAAHFVRDNL 152
>08_01_0661 -
5708088-5708131,5708217-5710048,5710527-5710625,
5711015-5711508,5711579-5711632,5712597-5712683,
5712684-5712776
Length = 900
Score = 28.3 bits (60), Expect = 6.9
Identities = 16/48 (33%), Positives = 20/48 (41%)
Frame = +1
Query: 553 YMEYLSHTMVLKRPGLSCKEWQLKYYFHHPQPTQMKRYETDLXMPLCQ 696
Y E LS + L RP L K W +YF +K + P CQ
Sbjct: 579 YQEILSQ-LHLDRPSLGSKGWYFTFYFSEAALQFIKSFPLPDAKPNCQ 625
>04_04_1449 -
33683791-33683940,33684036-33684110,33684849-33684940,
33685020-33685106,33685460-33685615,33685706-33685804,
33686180-33686307,33687355-33687416
Length = 282
Score = 28.3 bits (60), Expect = 6.9
Identities = 13/56 (23%), Positives = 30/56 (53%)
Frame = +3
Query: 552 LYGVFEPHNGLEAARLIMQRMAAEILFPPPSANTDEEIRDRLXNAFVSVEKAYIEN 719
L+GVF+ H G + A + Q + + +L P + + + + +A+ S + ++E+
Sbjct: 58 LFGVFDGHGGAKVAEYVKQNLFSHLLRHPKFIS---DTKVAIDDAYKSTDSEFLES 110
>03_02_0095 + 5593353-5593638,5593739-5594130,5594316-5594816
Length = 392
Score = 28.3 bits (60), Expect = 6.9
Identities = 18/55 (32%), Positives = 28/55 (50%), Gaps = 1/55 (1%)
Frame = +3
Query: 552 LYGVFEPHNGLEAARLIMQRMAAEIL-FPPPSANTDEEIRDRLXNAFVSVEKAYI 713
L GV++ H G EAAR + +R+ + I F S E+ L AF E+ ++
Sbjct: 70 LVGVYDGHGGPEAARFVNKRLFSLIQEFAAQSGGISAEV---LEKAFGETEEEFV 121
>01_06_0880 +
32687018-32687060,32687142-32687219,32687323-32687532,
32687868-32689744
Length = 735
Score = 28.3 bits (60), Expect = 6.9
Identities = 14/55 (25%), Positives = 26/55 (47%)
Frame = +3
Query: 567 EPHNGLEAARLIMQRMAAEILFPPPSANTDEEIRDRLXNAFVSVEKAYIENYDGM 731
E HN +E +R A + P+ N+DEE + + VS+ + + + G+
Sbjct: 373 EEHNAIERTHTDQERDAKDAAVKDPADNSDEEKKSDCTHDIVSLVEVNGKKFTGL 427
>01_02_0068 -
10803815-10804391,10804487-10804722,10804808-10804978,
10805709-10805867
Length = 380
Score = 28.3 bits (60), Expect = 6.9
Identities = 20/63 (31%), Positives = 31/63 (49%), Gaps = 8/63 (12%)
Frame = +3
Query: 555 YGVFEPHNGLEAARLIMQRMAAEILFP----PPSANTD----EEIRDRLXNAFVSVEKAY 710
YGVF+ H G +AA M+R A + F P + D E + + NAF+S + A
Sbjct: 109 YGVFDGHGGPDAA-AYMKRHAIRLFFEDSEFPQALEEDESFYESVEKSIHNAFLSADLAL 167
Query: 711 IEN 719
++
Sbjct: 168 ADD 170
>06_03_1445 -
30209354-30209396,30209798-30209875,30210220-30210285,
30212275-30212322,30212408-30212571,30212726-30213581,
30213673-30213786,30213853-30213996,30214075-30214304,
30214584-30214724,30214810-30214887,30214972-30215053,
30215130-30215184,30215284-30215407,30215548-30215641,
30215718-30215794,30215873-30215982,30216058-30216655
Length = 1033
Score = 27.9 bits (59), Expect = 9.1
Identities = 16/51 (31%), Positives = 25/51 (49%)
Frame = -1
Query: 465 LHTYSCTSEDRQSTVLLSYCYFYH*HLNSQLKYYFYFLFHETDLLLKNDQN 313
LHT + DR+ + +F + H N KY+ F E+D+ +N QN
Sbjct: 354 LHTLKAATPDRKL-----FIFFQNEHFNVVYKYHGRFFVLESDVGFRNYQN 399
>06_03_1433 -
30129184-30129226,30129628-30129705,30130050-30130115,
30132105-30132152,30132238-30132401,30132556-30133411,
30133503-30133616,30133683-30133826,30133905-30134134,
30134414-30134554,30134640-30134717,30134802-30134883,
30134958-30135012,30135112-30135235,30135376-30135469,
30135546-30135622,30135701-30135810,30135886-30136483
Length = 1033
Score = 27.9 bits (59), Expect = 9.1
Identities = 16/51 (31%), Positives = 25/51 (49%)
Frame = -1
Query: 465 LHTYSCTSEDRQSTVLLSYCYFYH*HLNSQLKYYFYFLFHETDLLLKNDQN 313
LHT + DR+ + +F + H N KY+ F E+D+ +N QN
Sbjct: 354 LHTLKAATPDRKL-----FIFFQNEHFNVVYKYHGRFFVLESDVGFRNYQN 399
>06_03_1416 +
30027066-30027663,30027739-30027848,30027927-30028003,
30028080-30028173,30028314-30028437,30028537-30028591,
30028666-30028747,30028832-30028909,30028995-30029135,
30029416-30029645,30029724-30029867,30029934-30030047,
30030139-30030994,30031149-30031312,30031398-30031445,
30033435-30033500,30033845-30033922,30034324-30034366
Length = 1033
Score = 27.9 bits (59), Expect = 9.1
Identities = 16/51 (31%), Positives = 25/51 (49%)
Frame = -1
Query: 465 LHTYSCTSEDRQSTVLLSYCYFYH*HLNSQLKYYFYFLFHETDLLLKNDQN 313
LHT + DR+ + +F + H N KY+ F E+D+ +N QN
Sbjct: 354 LHTLKAATPDRKL-----FIFFQNEHFNVVYKYHGRFFVLESDVGFRNYQN 399
>02_05_1091 +
34044999-34045082,34046848-34047048,34047312-34047523,
34047846-34048413
Length = 354
Score = 27.9 bits (59), Expect = 9.1
Identities = 24/108 (22%), Positives = 47/108 (43%)
Frame = +3
Query: 393 SGKNSNMIARPWTDDLPKCRNTCVASYFSKLGGHSNANDDYLCFFCQTEDNFCLYGVFEP 572
SG S++ R + +D C + ++ GH++ +D+ + F YGVF+
Sbjct: 55 SGDWSDIGGRDYMEDAHVCISDLANNF-----GHNSVDDEIISF----------YGVFDG 99
Query: 573 HNGLEAARLIMQRMAAEILFPPPSANTDEEIRDRLXNAFVSVEKAYIE 716
H G +AA + + I+ A+ E+ + +FV + + E
Sbjct: 100 HGGKDAAHYVRDNLPRVIV---EDADFPLELEKVVRRSFVQTDSQFAE 144
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,002,515
Number of Sequences: 37544
Number of extensions: 287534
Number of successful extensions: 654
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 641
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 654
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1980691104
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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