Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P08_F_H16
         (747 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z79598-7|CAB01866.1|  386|Caenorhabditis elegans Hypothetical pr...    32   0.38 
AF145375-1|AAD39814.1|  386|Caenorhabditis elegans TAB1-like pro...    32   0.38 
Z48638-8|CAA88568.1|  237|Caenorhabditis elegans Hypothetical pr...    30   1.5  
Z82267-4|CAB05192.1|  285|Caenorhabditis elegans Hypothetical pr...    28   8.1  

>Z79598-7|CAB01866.1|  386|Caenorhabditis elegans Hypothetical
           protein C44H4.5 protein.
          Length = 386

 Score = 32.3 bits (70), Expect = 0.38
 Identities = 21/74 (28%), Positives = 35/74 (47%), Gaps = 4/74 (5%)
 Frame = +3

Query: 504 NDDYL-CFFCQTEDNFCLYGVFEPHNGLEA-ARLIMQRMAAEILFPPPSANT--DEEIRD 671
           N+D+L C  C       LYG+F   NG ++ A+ +M R+  EI    P   T    ++ +
Sbjct: 35  NNDFLSCSMCIHNGPIKLYGIFSGFNGGDSTAKFVMNRLVYEIFGENPITPTLLPYQVVE 94

Query: 672 RLXNAFVSVEKAYI 713
                F +V + Y+
Sbjct: 95  EFKRKFENVAERYL 108


>AF145375-1|AAD39814.1|  386|Caenorhabditis elegans TAB1-like
           protein TAP-1 protein.
          Length = 386

 Score = 32.3 bits (70), Expect = 0.38
 Identities = 21/74 (28%), Positives = 35/74 (47%), Gaps = 4/74 (5%)
 Frame = +3

Query: 504 NDDYL-CFFCQTEDNFCLYGVFEPHNGLEA-ARLIMQRMAAEILFPPPSANT--DEEIRD 671
           N+D+L C  C       LYG+F   NG ++ A+ +M R+  EI    P   T    ++ +
Sbjct: 35  NNDFLSCSMCIHNGPIKLYGIFSGFNGGDSTAKFVMNRLVYEIFGENPITPTLLPYQVVE 94

Query: 672 RLXNAFVSVEKAYI 713
                F +V + Y+
Sbjct: 95  EFKRKFENVAERYL 108


>Z48638-8|CAA88568.1|  237|Caenorhabditis elegans Hypothetical
           protein ZK892.6 protein.
          Length = 237

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 15/51 (29%), Positives = 24/51 (47%), Gaps = 2/51 (3%)
 Frame = -3

Query: 709 YAFSTDTKAFXSLSRISSSVLAEGGGNNISAAILCMISLAASR--PLCGSN 563
           +   T      S  R+    + +G GNN+  A LC+I+L+  +   LC  N
Sbjct: 164 FQLCTMDSTLLSCPRLRKKYMFKGAGNNMDMACLCIITLSVEKLHQLCNLN 214


>Z82267-4|CAB05192.1|  285|Caenorhabditis elegans Hypothetical
           protein F38C2.6 protein.
          Length = 285

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 14/43 (32%), Positives = 24/43 (55%)
 Frame = -1

Query: 537 LFDRKNINNHR*HLSVLRALKNTKLHTYSCTSEDRQSTVLLSY 409
           L+D   +NN +  L+V+ ++ + KL+  +CTS D    V   Y
Sbjct: 240 LWDPGYVNNQQDCLAVISSISDLKLNMVNCTSYDVAIGVACGY 282


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,995,382
Number of Sequences: 27780
Number of extensions: 292061
Number of successful extensions: 676
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 658
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 676
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1766990064
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)