Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P08_F_H16
         (747 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodops...    24   1.7  
AB178034-1|BAD27112.1|   76|Apis mellifera apiceropsin protein.        24   1.7  
D79208-1|BAA11466.1|  567|Apis mellifera alpha-glucosidase protein.    23   2.3  
AB253417-1|BAE86928.1|  567|Apis mellifera alpha-glucosidase pro...    23   2.3  
DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholi...    23   4.0  
DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholi...    23   4.0  
DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholi...    22   7.0  

>U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodopsin
           protein.
          Length = 377

 Score = 23.8 bits (49), Expect = 1.7
 Identities = 10/28 (35%), Positives = 16/28 (57%)
 Frame = -1

Query: 237 MLNFESVLNIVTLSFYFHFYTSCTAKLN 154
           ++NF  + N+V +S  F  + S  AK N
Sbjct: 296 VINFSGIFNLVKISPLFTIWGSLFAKAN 323


>AB178034-1|BAD27112.1|   76|Apis mellifera apiceropsin protein.
          Length = 76

 Score = 23.8 bits (49), Expect = 1.7
 Identities = 10/28 (35%), Positives = 16/28 (57%)
 Frame = -1

Query: 237 MLNFESVLNIVTLSFYFHFYTSCTAKLN 154
           ++NF  + N+V +S  F  + S  AK N
Sbjct: 46  VINFSGIFNLVKISPLFTIWGSLFAKAN 73


>D79208-1|BAA11466.1|  567|Apis mellifera alpha-glucosidase protein.
          Length = 567

 Score = 23.4 bits (48), Expect = 2.3
 Identities = 10/25 (40%), Positives = 13/25 (52%)
 Frame = +3

Query: 504 NDDYLCFFCQTEDNFCLYGVFEPHN 578
           ND+   F  +TEDN  LY +    N
Sbjct: 486 NDNVFAFSRETEDNGSLYAILNFSN 510


>AB253417-1|BAE86928.1|  567|Apis mellifera alpha-glucosidase
           protein.
          Length = 567

 Score = 23.4 bits (48), Expect = 2.3
 Identities = 10/25 (40%), Positives = 13/25 (52%)
 Frame = +3

Query: 504 NDDYLCFFCQTEDNFCLYGVFEPHN 578
           ND+   F  +TEDN  LY +    N
Sbjct: 486 NDNVFAFSRETEDNGSLYAILNFSN 510


>DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 22.6 bits (46), Expect = 4.0
 Identities = 10/15 (66%), Positives = 13/15 (86%)
 Frame = -1

Query: 669 LVSLHLCWLRVVEII 625
           L+SLH+ +L VVEII
Sbjct: 283 LISLHVFFLLVVEII 297


>DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 22.6 bits (46), Expect = 4.0
 Identities = 10/15 (66%), Positives = 13/15 (86%)
 Frame = -1

Query: 669 LVSLHLCWLRVVEII 625
           L+SLH+ +L VVEII
Sbjct: 283 LISLHVFFLLVVEII 297


>DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholine
           receptor beta1subunit protein.
          Length = 520

 Score = 21.8 bits (44), Expect = 7.0
 Identities = 7/30 (23%), Positives = 18/30 (60%)
 Frame = +1

Query: 535 QRITFVYMEYLSHTMVLKRPGLSCKEWQLK 624
           Q I  ++++YL   ++++RP  +   W ++
Sbjct: 332 QLIRKIFLKYLPTILMMRRPKKTRLRWMME 361


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 178,642
Number of Sequences: 438
Number of extensions: 3821
Number of successful extensions: 7
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23388480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)