Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P08_F_H11
(508 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_01_1199 - 9657169-9657254,9657369-9657395,9657485-9657553,965... 170 6e-43
05_05_0300 + 23932947-23933196,23934022-23934123,23934249-239343... 167 4e-42
01_06_1103 - 34543915-34543955,34544069-34544137,34544294-345443... 162 1e-40
06_01_1127 + 9294079-9294193,9294300-9294369,9294611-9294716,929... 30 0.93
03_05_0830 + 28034179-28035492 29 2.1
08_01_0906 + 8933230-8933797,8933894-8934543,8937956-8938615,893... 27 6.5
09_04_0339 + 16812809-16812850,16813099-16813527 27 8.7
07_03_1085 - 23851852-23853165 27 8.7
>01_01_1199 -
9657169-9657254,9657369-9657395,9657485-9657553,
9657922-9658023,9659895-9660000,9660145-9660165
Length = 136
Score = 170 bits (413), Expect = 6e-43
Identities = 78/107 (72%), Positives = 90/107 (84%)
Frame = +1
Query: 58 MVAAKKQKKXIESINSRLALVMKSGKYCLGYKQTLKTLRQGKAKLVIIAKNAPPLRKSEI 237
MVAAKK KK ++IN++L LVMKSGKY LGYK L+TLR KAKLVII+ N PPLRKSEI
Sbjct: 1 MVAAKKTKKSTDNINNKLQLVMKSGKYTLGYKTVLRTLRNSKAKLVIISNNCPPLRKSEI 60
Query: 238 EYYALLAKTGVHHYSGNNIELGTACGKYYRVCTLAITDPGDSDIITT 378
EYYA+LAK VHH+ GNN++LGTACGKY+RVC L+I DPGDSDII T
Sbjct: 61 EYYAMLAKVTVHHFHGNNVDLGTACGKYFRVCCLSIIDPGDSDIIKT 107
>05_05_0300 +
23932947-23933196,23934022-23934123,23934249-23934317,
23934406-23934446
Length = 153
Score = 167 bits (406), Expect = 4e-42
Identities = 75/108 (69%), Positives = 86/108 (79%)
Frame = +1
Query: 61 VAAKKQKKXIESINSRLALVMKSGKYCLGYKQTLKTLRQGKAKLVIIAKNAPPLRKSEIE 240
V A QKK ++IN++L LVMKSGKY LGYK LKTLR K KL+I+A N PPLRKSEIE
Sbjct: 43 VVAMMQKKSTDNINNKLQLVMKSGKYTLGYKTVLKTLRNSKGKLIILANNCPPLRKSEIE 102
Query: 241 YYALLAKTGVHHYSGNNIELGTACGKYYRVCTLAITDPGDSDIITTLP 384
YYA+L K VHH+ GNN++LGTACGKYYRVC L+I DPGDSDII T P
Sbjct: 103 YYAMLGKVSVHHFHGNNVDLGTACGKYYRVCCLSIIDPGDSDIINTTP 150
>01_06_1103 -
34543915-34543955,34544069-34544137,34544294-34544395,
34545603-34545708,34545998-34546079,34546850-34547142
Length = 230
Score = 162 bits (394), Expect = 1e-40
Identities = 72/104 (69%), Positives = 84/104 (80%)
Frame = +1
Query: 79 KKXIESINSRLALVMKSGKYCLGYKQTLKTLRQGKAKLVIIAKNAPPLRKSEIEYYALLA 258
KK E IN++L LVMKSGKY LGYK LKTLR K KLVI+A N PPLRKSEIEYYA+L
Sbjct: 126 KKNAEGINNKLQLVMKSGKYTLGYKTVLKTLRNSKGKLVIVANNCPPLRKSEIEYYAMLG 185
Query: 259 KTGVHHYSGNNIELGTACGKYYRVCTLAITDPGDSDIITTLPEA 390
K V+H++GNN++LGTACGKYYRVC L++ DPGDSDI LPE+
Sbjct: 186 KVSVYHFNGNNVDLGTACGKYYRVCCLSVVDPGDSDITKQLPES 229
>06_01_1127 +
9294079-9294193,9294300-9294369,9294611-9294716,
9295665-9295805,9296377-9296475
Length = 176
Score = 30.3 bits (65), Expect = 0.93
Identities = 27/93 (29%), Positives = 46/93 (49%), Gaps = 6/93 (6%)
Frame = +1
Query: 109 LALVMKSGKY-CL--GYKQTLKTLRQGKAKLVIIAKNAPPLRKSEIEYYALLAKTG--VH 273
L LV ++ + CL G K+ +K++R+G+ L IIA N P+ I + +L + +
Sbjct: 33 LKLVRRASEAKCLKRGVKEVVKSIRRGQKGLCIIAGNISPI--DVITHVPILCEEANIPY 90
Query: 274 HYSGNNIELGTA-CGKYYRVCTLAITDPGDSDI 369
Y + +L TA K C L +T P ++
Sbjct: 91 VYVPSKEDLATAGTTKRPTCCVLVLTKPAKGEL 123
>03_05_0830 + 28034179-28035492
Length = 437
Score = 29.1 bits (62), Expect = 2.1
Identities = 12/28 (42%), Positives = 17/28 (60%)
Frame = +1
Query: 127 SGKYCLGYKQTLKTLRQGKAKLVIIAKN 210
+GKY G TLKTL G + +I+ +N
Sbjct: 299 TGKYVFGVDDTLKTLEMGAVETLIVWEN 326
>08_01_0906 + 8933230-8933797,8933894-8934543,8937956-8938615,
8939751-8939817,8940421-8940724,8942993-8942996,
8944539-8946449
Length = 1387
Score = 27.5 bits (58), Expect = 6.5
Identities = 18/52 (34%), Positives = 27/52 (51%)
Frame = +1
Query: 61 VAAKKQKKXIESINSRLALVMKSGKYCLGYKQTLKTLRQGKAKLVIIAKNAP 216
V++ Q +ES+ + L V SG Y LG+KQ L+T +G I+ P
Sbjct: 1333 VSSSLQFSGLESMET-LKEVWLSGSYELGFKQQLETELKGNENEPILELEKP 1383
>09_04_0339 + 16812809-16812850,16813099-16813527
Length = 156
Score = 27.1 bits (57), Expect = 8.7
Identities = 23/107 (21%), Positives = 43/107 (40%), Gaps = 4/107 (3%)
Frame = +1
Query: 40 SIYASKMVAAKKQKKXIESINSRLALVMKSGKYCLGYKQTLKTLRQGKAKLVIIAKNAPP 219
+I S ++ + K I+ + + + L K+ + + L ++ APP
Sbjct: 15 AIVVSAVLVQVECKAPIDKCLTEASQAINKALEALMDKRLTEASQANNKALDVVVVAAPP 74
Query: 220 LRKSEIEY----YALLAKTGVHHYSGNNIELGTACGKYYRVCTLAIT 348
+KSEIE+ + A + G+ +L TA Y V +T
Sbjct: 75 AKKSEIEHAMWKQRMFAFAALGMAEGDEKKLATASLAYKNVANAVLT 121
>07_03_1085 - 23851852-23853165
Length = 437
Score = 27.1 bits (57), Expect = 8.7
Identities = 11/28 (39%), Positives = 16/28 (57%)
Frame = +1
Query: 127 SGKYCLGYKQTLKTLRQGKAKLVIIAKN 210
+GKY G TLK L G + +I+ +N
Sbjct: 299 TGKYVFGVDDTLKALEMGAVETLIVWEN 326
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,352,495
Number of Sequences: 37544
Number of extensions: 208443
Number of successful extensions: 460
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 457
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 460
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1083123860
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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