Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P08_F_H10
         (730 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC8C9.04 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||...    26   4.8  
SPBC19C2.10 |||BAR adaptor protein|Schizosaccharomyces pombe|chr...    26   4.8  

>SPAC8C9.04 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 647

 Score = 26.2 bits (55), Expect = 4.8
 Identities = 12/45 (26%), Positives = 22/45 (48%)
 Frame = -3

Query: 707 MGPMLASCTASTSEDGRAQPSGSLSTSRGSCT*RPFTPSQVPMPQ 573
           +G   AS T+  +    AQPS  +  +    T +P T ++  +P+
Sbjct: 194 LGNSPASITSKPATTSAAQPSSKVEENMAKATSQPITTAEKEIPE 238


>SPBC19C2.10 |||BAR adaptor protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 501

 Score = 26.2 bits (55), Expect = 4.8
 Identities = 23/76 (30%), Positives = 30/76 (39%)
 Frame = -3

Query: 671 SEDGRAQPSGSLSTSRGSCT*RPFTPSQVPMPQQMSSTSSVTRL*APHILTLKPSSLTRH 492
           +ED   +       S G       TPS  P+P+      S T+        +KP+SL   
Sbjct: 311 TEDNYNKDVSDAQNSLGQSAVDLTTPSSPPIPRHTKPKLSTTQS-----TPVKPASLQSE 365

Query: 491 GDISLSSXNLVLSAIS 444
            DI LS     LSA S
Sbjct: 366 EDIQLSFKQPELSASS 381


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,766,116
Number of Sequences: 5004
Number of extensions: 56322
Number of successful extensions: 121
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 113
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 121
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 343230174
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)