Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P08_F_H10
         (730 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_05_0256 + 27201483-27202499,27203297-27203375,27204617-272049...    32   0.41 
02_02_0285 + 8582033-8582201,8582375-8582652,8582762-8583394           29   3.8  
03_02_0047 + 5262098-5262360,5263066-5263390,5263769-5263862,526...    29   5.0  
07_03_1650 + 28392401-28392823,28392975-28393052,28393150-283932...    28   6.6  
04_04_1299 + 32450998-32451134,32451575-32452304,32452856-324530...    28   8.7  

>02_05_0256 +
           27201483-27202499,27203297-27203375,27204617-27204946,
           27205029-27205198
          Length = 531

 Score = 32.3 bits (70), Expect = 0.41
 Identities = 25/78 (32%), Positives = 37/78 (47%), Gaps = 3/78 (3%)
 Frame = -3

Query: 725 PSRPYXMGPMLASCTASTSEDGRAQPSGSLSTSRGSCT*R---PFTPSQVPMPQQMSSTS 555
           P+    +   +A  TA+ +    A  SG  S S  + T R     TP  +P P + ++ S
Sbjct: 182 PADGTALAAAIADATAAVASASAAVFSGVSSLSIAAATARVEVAATPCWMPSPARFTTPS 241

Query: 554 SVTRL*APHILTLKPSSL 501
           +  R    HI+T KPSSL
Sbjct: 242 ATPR---HHIITTKPSSL 256


>02_02_0285 + 8582033-8582201,8582375-8582652,8582762-8583394
          Length = 359

 Score = 29.1 bits (62), Expect = 3.8
 Identities = 17/56 (30%), Positives = 24/56 (42%)
 Frame = -2

Query: 675 HQRGRQGPALGQPLDEQG*LHIETVHSEPGADAPADEQHVERHASLSAPHPHVEAF 508
           HQRG   P +    DE   L  + +H    + +P D++HV     L A   H   F
Sbjct: 165 HQRGFDQPDMAAAADEDE-LRYQLLHGAGMSSSPVDQKHVLLQEQLVAHGAHGGGF 219


>03_02_0047 +
           5262098-5262360,5263066-5263390,5263769-5263862,
           5263964-5264265
          Length = 327

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 17/58 (29%), Positives = 27/58 (46%)
 Frame = +3

Query: 528 VGRSKTRDARRAAHLLGHRHLARSERSLCAATPARREAARGLGPAVLAGAGRAARQHW 701
           +G    R A +AA + G+R  +   R++  A+PA + A    G    A +  AA   W
Sbjct: 1   MGGGSIRAAAKAAMIGGYRSASAVRRAVLPASPAPQTAPSAAGEGRKAASTYAAIDDW 58


>07_03_1650 +
           28392401-28392823,28392975-28393052,28393150-28393292,
           28393719-28393789,28393881-28393976,28394169-28394261,
           28394351-28394433
          Length = 328

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 17/29 (58%), Positives = 18/29 (62%)
 Frame = +3

Query: 606 SLCAATPARREAARGLGPAVLAGAGRAAR 692
           S CAA P+ R  A  L  AVLAG G AAR
Sbjct: 28  SCCAAPPSPRAVAADL-LAVLAGPGAAAR 55


>04_04_1299 +
           32450998-32451134,32451575-32452304,32452856-32453053,
           32453398-32454065,32454555-32454978,32455917-32456009,
           32456101-32456295,32456378-32456470,32456718-32456930,
           32457015-32457104,32457239-32457400
          Length = 1000

 Score = 27.9 bits (59), Expect = 8.7
 Identities = 12/36 (33%), Positives = 22/36 (61%)
 Frame = +3

Query: 129 EIRKFLFSELKLQWE*LKYRQWLIRLCPNTE*ININ 236
           EI K   ++ KL  +  K+R+W  + CP+ + +N+N
Sbjct: 529 EIEKVAVAQRKLAAD--KFRKWASKYCPDAKYMNVN 562


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,935,116
Number of Sequences: 37544
Number of extensions: 331636
Number of successful extensions: 904
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 877
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 904
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1909952136
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)