Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P08_F_H10
         (730 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AE014297-4819|AAF57205.3|  487|Drosophila melanogaster CG11576-P...    83   4e-16
AY071469-1|AAL49091.1|  395|Drosophila melanogaster RE54692p pro...    83   5e-16
X17558-1|CAA35591.1| 1299|Drosophila melanogaster patched protei...    30   3.7  
M28999-1|AAA28696.1| 1286|Drosophila melanogaster patched protein.     30   3.7  
AE013599-680|AAF59062.1| 1286|Drosophila melanogaster CG2411-PA ...    30   3.7  
AY071656-1|AAL49278.1|  788|Drosophila melanogaster RE73548p pro...    29   8.6  
AE014297-4131|AAF56716.2|  788|Drosophila melanogaster CG12885-P...    29   8.6  

>AE014297-4819|AAF57205.3|  487|Drosophila melanogaster CG11576-PA
           protein.
          Length = 487

 Score = 83.0 bits (196), Expect = 4e-16
 Identities = 35/54 (64%), Positives = 44/54 (81%)
 Frame = +1

Query: 553 LDVLLICWGIGTWLGVNGLYVQLPLLVERLPEGWALPSSLVLAVQLANIGPXLY 714
           +DVL I +GIGTWLGVNG ++QLPLLV+  PEGW+LPS L + VQ+ N+GP LY
Sbjct: 76  VDVLAIFFGIGTWLGVNGTFIQLPLLVDEAPEGWSLPSYLSVMVQIGNLGPLLY 129


>AY071469-1|AAL49091.1|  395|Drosophila melanogaster RE54692p
           protein.
          Length = 395

 Score = 82.6 bits (195), Expect = 5e-16
 Identities = 35/54 (64%), Positives = 43/54 (79%)
 Frame = +1

Query: 553 LDVLLICWGIGTWLGVNGLYVQLPLLVERLPEGWALPSSLVLAVQLANIGPXLY 714
           +DVL I +GIGTWLGVNG ++QLPLLV+  PEGW LPS L + VQ+ N+GP LY
Sbjct: 76  VDVLAIFFGIGTWLGVNGTFIQLPLLVDEAPEGWGLPSYLSVMVQIGNLGPLLY 129


>X17558-1|CAA35591.1| 1299|Drosophila melanogaster patched protein
           protein.
          Length = 1299

 Score = 29.9 bits (64), Expect = 3.7
 Identities = 14/36 (38%), Positives = 18/36 (50%)
 Frame = -3

Query: 440 FSRQVNQLIHKDEGFTRNFHIYVLSQNIFSYITIQF 333
           FSR+V QL+ K      N+ IYV S      I  +F
Sbjct: 389 FSREVEQLLRKQSRIATNYDIYVFSSAALDDILAKF 424


>M28999-1|AAA28696.1| 1286|Drosophila melanogaster patched protein.
          Length = 1286

 Score = 29.9 bits (64), Expect = 3.7
 Identities = 14/36 (38%), Positives = 18/36 (50%)
 Frame = -3

Query: 440 FSRQVNQLIHKDEGFTRNFHIYVLSQNIFSYITIQF 333
           FSR+V QL+ K      N+ IYV S      I  +F
Sbjct: 389 FSREVEQLLRKQSRIATNYDIYVFSSAALDDILAKF 424


>AE013599-680|AAF59062.1| 1286|Drosophila melanogaster CG2411-PA
           protein.
          Length = 1286

 Score = 29.9 bits (64), Expect = 3.7
 Identities = 14/36 (38%), Positives = 18/36 (50%)
 Frame = -3

Query: 440 FSRQVNQLIHKDEGFTRNFHIYVLSQNIFSYITIQF 333
           FSR+V QL+ K      N+ IYV S      I  +F
Sbjct: 389 FSREVEQLLRKQSRIATNYDIYVFSSAALDDILAKF 424


>AY071656-1|AAL49278.1|  788|Drosophila melanogaster RE73548p
           protein.
          Length = 788

 Score = 28.7 bits (61), Expect = 8.6
 Identities = 16/37 (43%), Positives = 20/37 (54%)
 Frame = -3

Query: 662 GRAQPSGSLSTSRGSCT*RPFTPSQVPMPQQMSSTSS 552
           GR+QPS S +    + T      SQ    QQ+SSTSS
Sbjct: 172 GRSQPSASAAAGPAAATPTSTLSSQEKGAQQLSSTSS 208


>AE014297-4131|AAF56716.2|  788|Drosophila melanogaster CG12885-PA
           protein.
          Length = 788

 Score = 28.7 bits (61), Expect = 8.6
 Identities = 16/37 (43%), Positives = 20/37 (54%)
 Frame = -3

Query: 662 GRAQPSGSLSTSRGSCT*RPFTPSQVPMPQQMSSTSS 552
           GR+QPS S +    + T      SQ    QQ+SSTSS
Sbjct: 172 GRSQPSASAAAGPAAATPTSTLSSQEKGAQQLSSTSS 208


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 28,860,937
Number of Sequences: 53049
Number of extensions: 580137
Number of successful extensions: 1362
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1273
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1356
length of database: 24,988,368
effective HSP length: 83
effective length of database: 20,585,301
effective search space used: 3273062859
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)