Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P08_F_H06
         (840 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CR954257-14|CAJ14165.1| 1726|Anopheles gambiae BEL12_AG transpos...    29   0.18 
AJ439353-3|CAD27925.1| 1200|Anopheles gambiae putative TPR-conta...    29   0.23 
AJ535203-1|CAD59403.1| 1229|Anopheles gambiae SMC1 protein protein.    27   0.71 
AJ535204-1|CAD59404.1| 1187|Anopheles gambiae SMC2 protein protein.    26   1.2  
AY705401-1|AAU12510.1|  490|Anopheles gambiae nicotinic acetylch...    25   2.9  
AY705400-1|AAU12509.1|  490|Anopheles gambiae nicotinic acetylch...    25   2.9  
AJ439060-11|CAD27762.1| 1881|Anopheles gambiae putative cell-adh...    24   5.0  

>CR954257-14|CAJ14165.1| 1726|Anopheles gambiae BEL12_AG transposon
            polyprotein protein.
          Length = 1726

 Score = 29.1 bits (62), Expect = 0.18
 Identities = 32/141 (22%), Positives = 66/141 (46%), Gaps = 9/141 (6%)
 Frame = +2

Query: 254  DQNHSPPQLASEVNNFDSSPQQKQ-KNCENNNILEENYDNKLLENTLSATE---ILICNE 421
            D  H P  + S  N  +++ ++KQ K      + EE++ NKL E   S T+   I+    
Sbjct: 1197 DPKHWPKNIESG-NTCETAKEEKQTKTTLTCMVKEESFINKLCERVGSFTKLKRIVAYCH 1255

Query: 422  RKLETQVSELQS--KLSELEQKYTDAVKLINQS--NQSFHNLQNETKTLQNNSLLLTNEL 589
            R  + +    +S  +L EL++     ++L+        +  ++   + ++ + L +   +
Sbjct: 1256 RFFDRKRIHRKSYFELRELKRAEKTIIRLVQNEVYATEYECIKQGQQVVRKSPLRVIRPI 1315

Query: 590  LIKDNKIQESEK-SNSSLSDE 649
            L KDN ++   + SN+ + DE
Sbjct: 1316 LDKDNVMRVGGRLSNADIKDE 1336


>AJ439353-3|CAD27925.1| 1200|Anopheles gambiae putative
           TPR-containing phosphoprotein protein.
          Length = 1200

 Score = 28.7 bits (61), Expect = 0.23
 Identities = 15/56 (26%), Positives = 23/56 (41%)
 Frame = -2

Query: 386 YFQAAYYRSSPLKYYCFHNFFAFAEETSRNY*LQKLIEVANDFDHSFSDMFLSEHF 219
           +F+  Y +   L  + FHN    A      Y L +   V  D+D +F   + S  F
Sbjct: 279 FFKKDYQKVQHLALHAFHNTENEAMRAESCYQLARAFHVQRDYDQAFQYYYQSTQF 334


>AJ535203-1|CAD59403.1| 1229|Anopheles gambiae SMC1 protein protein.
          Length = 1229

 Score = 27.1 bits (57), Expect = 0.71
 Identities = 14/75 (18%), Positives = 37/75 (49%)
 Frame = +2

Query: 428 LETQVSELQSKLSELEQKYTDAVKLINQSNQSFHNLQNETKTLQNNSLLLTNELLIKDNK 607
           +E+Q+  L+++L         + K IN+ ++   +   E   +      +   +  +D K
Sbjct: 714 VESQIRGLENRLKYSMNDLETSKKNINEYDRQLEDFTRELDQIGPKISEIERRMQQRDMK 773

Query: 608 IQESEKSNSSLSDEI 652
           IQ+ ++S +++ D++
Sbjct: 774 IQDIKESMNNVEDDV 788


>AJ535204-1|CAD59404.1| 1187|Anopheles gambiae SMC2 protein protein.
          Length = 1187

 Score = 26.2 bits (55), Expect = 1.2
 Identities = 25/102 (24%), Positives = 37/102 (36%), Gaps = 8/102 (7%)
 Frame = +2

Query: 431 ETQVSELQSKLSELEQKYTDAVKLINQSNQSFHNLQNETKTLQNNSL-LLTNELLIKDNK 607
           E  ++ LQS + E EQK            Q    LQ    T     L  L  +L ++  K
Sbjct: 250 ERTIANLQSVIGESEQKIESNCATAQTLEQEAKELQERIDTEGGGVLGELEQQLAVESKK 309

Query: 608 IQESEKSNSSLSDEI-------NNLQEQLEFTKTMLTAKETE 712
                   +++ D I        NLQ+ +   +  L  KE E
Sbjct: 310 EATVAAERNTMKDSIGQEQRKLKNLQKSIRDDEQALAGKEVE 351


>AY705401-1|AAU12510.1|  490|Anopheles gambiae nicotinic
           acetylcholine receptor subunitalpha 6 protein.
          Length = 490

 Score = 25.0 bits (52), Expect = 2.9
 Identities = 16/98 (16%), Positives = 44/98 (44%), Gaps = 1/98 (1%)
 Frame = +2

Query: 422 RKLETQVSELQSKLSELEQKYTDAVKLINQSNQSFHNLQNETKTLQNNSLLLTNELLIKD 601
           RK+  +   L +++ ELE K   +  L+        + ++    +  ++  +   +  + 
Sbjct: 351 RKITRKTIILSNRMKELELKERSSKSLLANVLDIDDDFRHPCSGISGSTTAIGGSVFTRL 410

Query: 602 NKIQESEKSNSSLSDEINNLQEQLEF-TKTMLTAKETE 712
             ++E   S+     +++++ ++L+F T  M  A E +
Sbjct: 411 TTVEEQNVSSGCSHKDLHHILKELQFITNRMKKADEEQ 448


>AY705400-1|AAU12509.1|  490|Anopheles gambiae nicotinic
           acetylcholine receptor subunitalpha 6 protein.
          Length = 490

 Score = 25.0 bits (52), Expect = 2.9
 Identities = 16/98 (16%), Positives = 44/98 (44%), Gaps = 1/98 (1%)
 Frame = +2

Query: 422 RKLETQVSELQSKLSELEQKYTDAVKLINQSNQSFHNLQNETKTLQNNSLLLTNELLIKD 601
           RK+  +   L +++ ELE K   +  L+        + ++    +  ++  +   +  + 
Sbjct: 351 RKITRKTIILSNRMKELELKERSSKSLLANVLDIDDDFRHPCSGISGSTTAIGGSVFTRL 410

Query: 602 NKIQESEKSNSSLSDEINNLQEQLEF-TKTMLTAKETE 712
             ++E   S+     +++++ ++L+F T  M  A E +
Sbjct: 411 TTVEEQNVSSGCSHKDLHHILKELQFITNRMKKADEEQ 448


>AJ439060-11|CAD27762.1| 1881|Anopheles gambiae putative cell-adhesion
            protein protein.
          Length = 1881

 Score = 24.2 bits (50), Expect = 5.0
 Identities = 13/39 (33%), Positives = 22/39 (56%)
 Frame = +2

Query: 335  ENNNILEENYDNKLLENTLSATEILICNERKLETQVSEL 451
            +NN++LE +   +LL+  +   + L      L+TQ SEL
Sbjct: 1680 KNNSVLEVHQVLQLLDTHVEKLDRLFKEFNVLDTQASEL 1718


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 580,663
Number of Sequences: 2352
Number of extensions: 8798
Number of successful extensions: 36
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 35
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 36
length of database: 563,979
effective HSP length: 64
effective length of database: 413,451
effective search space used: 88891965
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)