Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P08_F_H02
         (529 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC31A2.03 |mrpl11||mitochondrial ribosomal protein subunit L11...    27   1.7  
SPAC688.07c |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    26   3.0  
SPBP8B7.23 |||ubiquitin-protein ligase E3 |Schizosaccharomyces p...    25   5.3  

>SPAC31A2.03 |mrpl11||mitochondrial ribosomal protein subunit
           L11|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 216

 Score = 27.1 bits (57), Expect = 1.7
 Identities = 10/21 (47%), Positives = 16/21 (76%)
 Frame = +2

Query: 200 REFIKNNYVNIKKENPNFPIL 262
           + F+ +NYV + +E+PNF IL
Sbjct: 21  KSFLHSNYVQLIQESPNFLIL 41


>SPAC688.07c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1038

 Score = 26.2 bits (55), Expect = 3.0
 Identities = 14/69 (20%), Positives = 32/69 (46%)
 Frame = +2

Query: 173 QTSKQSEGVREFIKNNYVNIKKENPNFPILIRECSGIQPRVWARYERGAEKSTPLTNLSA 352
           Q   +   +R+      +N+K+ + + P    E   I+P  ++RY++  E    L  +  
Sbjct: 179 QDDNRVSDIRQMENRRELNVKRRSVSSPA---EDLAIRPLSFSRYKKAEEIPESLPPIKG 235

Query: 353 NDVLSAIKQ 379
            D  S++++
Sbjct: 236 RDSFSSVRE 244


>SPBP8B7.23 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 673

 Score = 25.4 bits (53), Expect = 5.3
 Identities = 11/16 (68%), Positives = 11/16 (68%)
 Frame = -2

Query: 156 NAFSAPPRRSAIXTNY 109
           NAFSAPPRRS     Y
Sbjct: 140 NAFSAPPRRSRGYNTY 155


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,531,452
Number of Sequences: 5004
Number of extensions: 26517
Number of successful extensions: 47
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 47
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 47
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 216376042
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)