Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P08_F_H02
         (529 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_03_0304 - 14119371-14119390,14119868-14119974,14120064-14120149     71   4e-13
03_02_0093 - 5581087-5581259,5581956-5582062,5582644-5582723           36   0.020

>04_03_0304 - 14119371-14119390,14119868-14119974,14120064-14120149
          Length = 70

 Score = 71.3 bits (167), Expect = 4e-13
 Identities = 27/48 (56%), Positives = 38/48 (79%)
 Frame = +2

Query: 170 CQTSKQSEGVREFIKNNYVNIKKENPNFPILIRECSGIQPRVWARYER 313
           CQ+S  S   REF+K NY +IK  NP+ P+LIRECSG++P++WARY++
Sbjct: 19  CQSSPASAPAREFVKKNYGDIKARNPSLPVLIRECSGVEPQLWARYDK 66


>03_02_0093 - 5581087-5581259,5581956-5582062,5582644-5582723
          Length = 119

 Score = 35.9 bits (79), Expect = 0.020
 Identities = 16/68 (23%), Positives = 33/68 (48%)
 Frame = +2

Query: 161 IHLCQTSKQSEGVREFIKNNYVNIKKENPNFPILIRECSGIQPRVWARYERGAEKSTPLT 340
           ++ C     S G+R F++ +    K++NP+  ++     G  P +   Y+   E+   + 
Sbjct: 14  VNYCDWGGSSRGIRAFMEAHLPAFKEKNPHLEVVTELVRGQHPNLKGIYKNHNERVVCVR 73

Query: 341 NLSANDVL 364
           NL+  D+L
Sbjct: 74  NLAPEDIL 81


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,151,892
Number of Sequences: 37544
Number of extensions: 145629
Number of successful extensions: 266
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 265
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 266
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1166441080
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)