Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P08_F_G21
(705 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_05_0898 + 28610123-28610203,28611190-28611271,28611666-286117... 175 4e-44
10_02_0145 - 5817684-5817751,5817850-5817955,5818145-5818222,581... 155 3e-38
03_04_0247 - 19331253-19331293,19331438-19331621 31 1.2
02_04_0192 + 20795659-20796309 29 2.7
09_02_0450 + 9468495-9468528,9468947-9469062,9470031-9470858,947... 29 4.8
01_06_1028 + 33920741-33920944,33921078-33921182,33921307-339214... 29 4.8
10_07_0011 + 11788818-11789590,11789999-11790098,11790144-117903... 28 6.3
03_05_0873 + 28428190-28428482,28428620-28428791,28428882-28429484 28 6.3
>03_05_0898 +
28610123-28610203,28611190-28611271,28611666-28611721,
28612253-28612366,28612484-28612546,28612633-28612752,
28612850-28612950,28613097-28613156,28613243-28613342,
28613421-28613575,28613661-28613756,28614269-28614403,
28614510-28614573,28614648-28614729,28615038-28615213,
28615302-28615378,28615637-28615769,28615939-28616055,
28616394-28616398,28616564-28616684,28616711-28617751
Length = 992
Score = 175 bits (425), Expect = 4e-44
Identities = 90/186 (48%), Positives = 120/186 (64%), Gaps = 8/186 (4%)
Frame = +2
Query: 170 TKPYEGQKPGTSGLRKKVKVFVQENYTENFIQCILDVNKTSLI-GSTLVVGGDGRYLVKE 346
T P++GQKPGTSGLRKKV VF Q +Y +NF+Q + + G+T+VV GDGRY K+
Sbjct: 11 TTPFDGQKPGTSGLRKKVTVFQQPHYLQNFVQSTFNALPADKVKGATIVVSGDGRYFSKD 70
Query: 347 VVDKIIKISAXNGVSKLIVGQNGILSTPAVSYIIRKY------KTLGGIVLTASHNPGGV 508
V I K++A NGV ++ VGQN ++STPAVS +IR+ K G +LTASHNPGG
Sbjct: 71 AVQIITKMAAANGVRRVWVGQNSLMSTPAVSAVIRERVGADGSKATGAFILTASHNPGGP 130
Query: 509 DEDFGIKFNCSNGGPASDATTDAIYKLSTSIKQYKIVPDL-NCAIDKIDVHNFKVXQRQF 685
EDFGIK+N NGGPA ++ TD I+ +T+I +Y I DL + I + V F + F
Sbjct: 131 TEDFGIKYNMENGGPAPESVTDKIFSNTTTITEYLIAEDLPDVDISVVGVTTFSGPEGPF 190
Query: 686 TVEVID 703
V+V D
Sbjct: 191 DVDVFD 196
>10_02_0145 -
5817684-5817751,5817850-5817955,5818145-5818222,
5818334-5818380,5818476-5818557,5818688-5818829,
5819027-5819142,5819244-5819318,5819413-5819531,
5820569-5820636,5820739-5820803,5820887-5820968,
5821462-5821514,5821589-5821711,5821986-5822054,
5822581-5822649,5822735-5822786,5823423-5823475,
5823562-5823654,5823762-5823806,5824616-5824777
Length = 588
Score = 155 bits (376), Expect = 3e-38
Identities = 83/165 (50%), Positives = 110/165 (66%), Gaps = 3/165 (1%)
Frame = +2
Query: 218 KVKVFVQENYTENFIQCILD-VNKTSLIGSTLVVGGDGRYLVKEVVDKIIKISAXNGVSK 394
KVKVF QENY N+IQ + + + +G TLV+GGDGRY K+ I KI+A NGV K
Sbjct: 54 KVKVFQQENYLANWIQALFNSLPPEDYVGGTLVLGGDGRYFNKDAAQIITKIAAGNGVGK 113
Query: 395 LIVGQNGILSTPAVSYIIRKYKTLGGIVLTASHNPGGVDEDFGIKFNCSNGGPASDATTD 574
++VG+NG+LSTPAVS +IRK + GG +++ASHNPGG D D+GIKFN S+G PA + TD
Sbjct: 114 ILVGRNGLLSTPAVSAVIRKRQANGGFIMSASHNPGGPDNDWGIKFNYSSGQPAPETITD 173
Query: 575 AIYKLSTSIKQYKI--VPDLNCAIDKIDVHNFKVXQRQFTVEVID 703
IY + SI + K +PD++ + + V V FTVEVID
Sbjct: 174 QIYGNTLSISEIKTADIPDVD--LSSLGV----VSYGDFTVEVID 212
>03_04_0247 - 19331253-19331293,19331438-19331621
Length = 74
Score = 30.7 bits (66), Expect = 1.2
Identities = 17/53 (32%), Positives = 26/53 (49%)
Frame = -1
Query: 681 CR*XTLKLCTSILSMAQFKSGTILYCFIEVLSL*MASVVASEAGPPLLQLNFM 523
C T LC S LS +S + YC + SL ++ ++ A P L Q+ F+
Sbjct: 11 CAGCTCNLCASALSAISRRSARLAYCGLFAASLILSFLMRQFATPLLKQIPFV 63
>02_04_0192 + 20795659-20796309
Length = 216
Score = 29.5 bits (63), Expect = 2.7
Identities = 26/79 (32%), Positives = 35/79 (44%), Gaps = 3/79 (3%)
Frame = -1
Query: 525 MPKSSSTPPGLWEAVRTIPPRVLYFLMI*DTAGV--ESIPFCPT-INFETPFXALILIIL 355
MP SSS PP A P R ++ +AG S F T + +PF + +
Sbjct: 1 MPSSSSPPPPPPPATTATPRRRRRRRLLPSSAGGGGSSSSFSSTNSSSSSPFVSFLPPPT 60
Query: 354 STTSFTRYLPSPPTTSVDP 298
S + F R+LPSP S P
Sbjct: 61 SPSPFHRFLPSPLRASSVP 79
>09_02_0450 +
9468495-9468528,9468947-9469062,9470031-9470858,
9470955-9471107,9471194-9471604
Length = 513
Score = 28.7 bits (61), Expect = 4.8
Identities = 13/34 (38%), Positives = 21/34 (61%)
Frame = +2
Query: 350 VDKIIKISAXNGVSKLIVGQNGILSTPAVSYIIR 451
+D+++K + GV L + NG+ ST A SY+ R
Sbjct: 105 IDRVMKKHSGIGVKALTIEFNGLFSTKARSYLER 138
>01_06_1028 +
33920741-33920944,33921078-33921182,33921307-33921444,
33921542-33921589,33921759-33921839,33921984-33922137,
33922653-33922759,33922861-33923076
Length = 350
Score = 28.7 bits (61), Expect = 4.8
Identities = 15/39 (38%), Positives = 19/39 (48%), Gaps = 2/39 (5%)
Frame = +2
Query: 584 KLSTSIKQYKIVPDLNCAIDKIDVHN--FKVXQRQFTVE 694
K+ K + DLNCA ID+HN K FT+E
Sbjct: 165 KILEKSKPVIVAGDLNCARQSIDIHNPPAKTKSAGFTIE 203
>10_07_0011 +
11788818-11789590,11789999-11790098,11790144-11790380,
11790683-11790754
Length = 393
Score = 28.3 bits (60), Expect = 6.3
Identities = 10/25 (40%), Positives = 16/25 (64%)
Frame = -3
Query: 298 YQRGFIHVQNALNKILRVVFLDENF 224
Y RG +HVQ N ++R+ LD+ +
Sbjct: 242 YWRGALHVQMKNNDVIRITLLDDKY 266
>03_05_0873 + 28428190-28428482,28428620-28428791,28428882-28429484
Length = 355
Score = 28.3 bits (60), Expect = 6.3
Identities = 16/47 (34%), Positives = 21/47 (44%)
Frame = +2
Query: 386 VSKLIVGQNGILSTPAVSYIIRKYKTLGGIVLTASHNPGGVDEDFGI 526
V KL Q + S V I K + G+V+ H P DED G+
Sbjct: 157 VQKLSTKQPSLESRQMVLQEIAAEKGIAGVVVHVVHEPSSHDEDSGL 203
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,122,561
Number of Sequences: 37544
Number of extensions: 423921
Number of successful extensions: 1177
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1137
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1173
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1815633512
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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