Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P08_F_G21
         (705 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ535204-1|CAD59404.1| 1187|Anopheles gambiae SMC2 protein protein.    27   0.76 
AY939827-1|AAY18208.1|  680|Anopheles gambiae CTCF-like protein ...    23   7.1  
AY263176-1|AAP78791.1|  705|Anopheles gambiae TmcB-like protein ...    23   7.1  

>AJ535204-1|CAD59404.1| 1187|Anopheles gambiae SMC2 protein protein.
          Length = 1187

 Score = 26.6 bits (56), Expect = 0.76
 Identities = 25/90 (27%), Positives = 40/90 (44%), Gaps = 6/90 (6%)
 Frame = +2

Query: 116 LLDTYLITRIMSNSVMVDTKPYEG--QKPGTSGLRKKVKVFVQENYTENFIQCILDVNKT 289
           +LD+      +SN V V     +    K G +G+ K     + +N   N  QC +     
Sbjct: 41  ILDSICFVLGISNLVHVRATSLQDLVYKSGQAGITKATVTLIFDNSNPN--QCPIGYETC 98

Query: 290 SLIGST--LVVGGDGRYLV--KEVVDKIIK 367
             I  T  +VVGG  +YL+  K V +K ++
Sbjct: 99  REISITRQIVVGGKNKYLINGKSVQNKRVQ 128


>AY939827-1|AAY18208.1|  680|Anopheles gambiae CTCF-like protein
           protein.
          Length = 680

 Score = 23.4 bits (48), Expect = 7.1
 Identities = 12/28 (42%), Positives = 16/28 (57%)
 Frame = +2

Query: 311 VVGGDGRYLVKEVVDKIIKISAXNGVSK 394
           V  GDG+Y+V EV+    K S   G+ K
Sbjct: 520 VEDGDGQYVVLEVIQLQDKDSKAAGMEK 547


>AY263176-1|AAP78791.1|  705|Anopheles gambiae TmcB-like protein
           protein.
          Length = 705

 Score = 23.4 bits (48), Expect = 7.1
 Identities = 11/16 (68%), Positives = 13/16 (81%)
 Frame = +3

Query: 180 MRAKSRAQVDCVKKLK 227
           +RAKSRAQ+  VK LK
Sbjct: 602 LRAKSRAQIAKVKLLK 617


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 749,866
Number of Sequences: 2352
Number of extensions: 16785
Number of successful extensions: 31
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 30
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 31
length of database: 563,979
effective HSP length: 62
effective length of database: 418,155
effective search space used: 71922660
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)